Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase (NCBI) from Escherichia coli BW25113

Subject, 341 a.a., RluA family pseudouridine synthase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  162 bits (411), Expect = 8e-45
 Identities = 108/308 (35%), Positives = 161/308 (52%), Gaps = 12/308 (3%)

Query: 8   VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67
           V  + +  DE G R+D + R +   +    + ++ R G++RV+  RIKPE +L AG  VR
Sbjct: 15  VLTIYVAEDEDGIRLDRWFRRRWPHLSNIQVQKMARSGQIRVDGARIKPEGRLTAGAAVR 74

Query: 68  IPPVR--VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125
           +PP+    + +  +A +   + +A    ++LYEDD ++ LNKP G AV GG+  S  V  
Sbjct: 75  VPPIPDDTSRQAGDAHTLSERDIAFAKSLVLYEDDMVIALNKPHGLAVQGGTKTSRHVDR 134

Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185
            L A         LVHRLDRDTSGVLL+ K   A + L      +  +K Y A+V G  +
Sbjct: 135 LLSAWGEGLERPRLVHRLDRDTSGVLLLGKGPEAAKRLAGAFARRQAKKTYWAIVIGNPK 194

Query: 186 SHVKSVQAPLLKNILQSGERI---VRVSQEGKPSETRFKVEERYAF-ATLVRCSPVTGRT 241
            +   +  PL K  +   E +    R     +P+ET F    R +  A  +   P TGRT
Sbjct: 195 PYSGQIDMPLKKTGINDFEMMRPAERKDPRAEPAETAFSTISRASHRAAWMALRPFTGRT 254

Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301
           HQ+R H    GHPI  D +YGD E  R+L    +G  +L LHA +++  HP  G V+++ 
Sbjct: 255 HQLRAHMAGIGHPILGDPKYGD-EKSREL----SGPLKLQLHARSIELDHP-RGGVLKVT 308

Query: 302 APMDEGLK 309
           AP+   +K
Sbjct: 309 APLSPEMK 316