Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase (NCBI) from Escherichia coli BW25113

Subject, 329 a.a., ribosomal large subunit pseudouridine synthase C from Agrobacterium fabrum C58

 Score =  168 bits (425), Expect = 2e-46
 Identities = 109/309 (35%), Positives = 162/309 (52%), Gaps = 17/309 (5%)

Query: 8   VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67
           ++ + + ADEAG R+D + +    G+    + ++LR G+VRV+  R+K + +++ G  VR
Sbjct: 4   IEHIKVEADEAGMRLDRWFKIHYPGLGFGQLQKLLRSGQVRVDGGRVKTDARVQPGQMVR 63

Query: 68  IPPVRVAEREEEAVS-----PHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122
           +PPV    + +          H      LA ++L+EDD +LV NKP+G AV GGSG++  
Sbjct: 64  VPPVDSDMKTKTGPIGSKDLKHSADGELLARMLLHEDDKVLVFNKPAGIAVQGGSGVNRH 123

Query: 123 VIEGLRA-LRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181
           +   L A   P+     LVHRLDRDTSGVL+VA+ R A + L    RE+  +K Y ALVR
Sbjct: 124 IDGLLEAWTSPKGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRERDTKKTYWALVR 183

Query: 182 GQWQSHVKSVQAPLLKNILQSGE--RIVRVSQEGKPSETRF--KVEERYAFATLVRCSPV 237
           G  + H   +   L+K     G+  RI +  +EG      +   ++        +   P 
Sbjct: 184 GVPRKHQDKISTWLVKEQTPDGDRMRIAKHGEEGADHAISYYRVIDTAAQNLAWLEMEPY 243

Query: 238 TGRTHQIRVHTQYAGHPIAFDDRY--GDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295
           TGRTHQ+RVH  + GHPI  D +Y   D  +D      G    RL LHA  +   HP  G
Sbjct: 244 TGRTHQLRVHALHMGHPIIGDPKYYIDDPNWD----FPGGVQKRLHLHARHIDIPHPNGG 299

Query: 296 EVMRIEAPM 304
             +R+ AP+
Sbjct: 300 R-LRVSAPL 307