Pairwise Alignments

Query, 1061 a.a., fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) from Escherichia coli BW25113

Subject, 913 a.a., ribonuclease E/G from Magnetospirillum magneticum AMB-1

 Score =  401 bits (1031), Expect = e-115
 Identities = 273/741 (36%), Positives = 398/741 (53%), Gaps = 71/741 (9%)

Query: 90  IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDR 148
           I++V++  Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN  R GG+SR+I    DR
Sbjct: 177 IQEVVKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGVSRKIVSATDR 236

Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208
             LK     +++P+GM +I+RTAG  +S   ++ D  + L+ W+++++      AP L++
Sbjct: 237 RRLKSIANEMDIPDGMAVIIRTAGSERSKTEIKRDYEYLLRMWDSVRELTLKSSAPALVY 296

Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEI-PLFS 267
           +E+++I R+ RD   +DI E+L+D  +   LA+ ++  L  P  + K++ Y   + P+F 
Sbjct: 297 EEASLIKRSIRDLYSRDIDEVLVDGDEGYRLAKDYMRML-TPSHAKKVQPYKDPVMPMFH 355

Query: 268 HYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAA 327
            YQ+E+Q+++     V+L SGG IVI  TEAL AID+NS RAT+   IEETA  TN+EAA
Sbjct: 356 RYQVEAQLDAMHSPVVQLKSGGYIVISQTEALVAIDVNSGRATKERHIEETALKTNMEAA 415

Query: 328 DEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEM 387
           DE+ARQLRLRDL GLIVIDFIDM   R+  AVE R++EA++ DRARIQ+  IS FGLLE+
Sbjct: 416 DEVARQLRLRDLAGLIVIDFIDMEENRNNHAVERRMKEALKNDRARIQVGKISAFGLLEL 475

Query: 388 SRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPI 447
           SRQRL PSL E++   CP C GTG VR  ES ++ ILR IEEE ++  + E+   VP  I
Sbjct: 476 SRQRLRPSLQETTFSPCPHCGGTGLVRSVESAAVHILRAIEEEGIRRRSSEITVYVPTAI 535

Query: 448 ASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR---KGEETPTLSYMLPK 504
           A Y+LN+KRSA+ AIE R +    ++  +D +  P + + +V+   + +E P  +  +  
Sbjct: 536 ALYILNQKRSALAAIEERYE-FDVLLSGDDTLIPPAFRMDKVKAEFRPDEPPRAAISMDD 594

Query: 505 LHEEAMALP----SEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPA 560
                 A P    +EEE  E +   QP  ++ A  +       +E          +    
Sbjct: 595 AAHRPPAEPEPEEAEEEDDEDEEEAQPERSSRAREERGEEDPDSEAGRKRRRRRRRRRKP 654

Query: 561 TPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQ-------------- 606
               P Q G             +G E+ +   + + + EA+ E  +              
Sbjct: 655 GDDRPEQDG----------EAVAGDEQPRAEGESSAEGEAESEDDEGDAEGEGEGTRTEG 704

Query: 607 ---DRRKPRQNNRRD--RNERRDTRSE----------RTEGSDNREENRRNRRQAQQQTA 651
              D+ + R+  RR   R  RRD   E           T G+D  E        A +  A
Sbjct: 705 GDDDQPRKRRRGRRGGRRRRRRDGEGEGEGAEAGEGGETAGADGAEGEGVEGVTAPE--A 762

Query: 652 ETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEE 711
           ET  +  Q    E+A    E+ AP  E   +R     + + EAK      +    T +E 
Sbjct: 763 ETVAAAPQDAAAEEAAAVVEEAAPAAEEKPKRKRAPAKKKAEAKPEGAAPEEAPATAEE- 821

Query: 712 RVRPVQPRRKQRQLNQKV--RYEQSVAEEAVV-APVVE------ETVAAEPIVQEAPAPR 762
                +P+RK+    +KV  + E + AE AV+ APV E      E VAAEP V  AP P 
Sbjct: 822 -----KPKRKRAPAKKKVDAKAEAAPAEIAVIEAPVAESVVAEPEVVAAEP-VAAAPEP- 874

Query: 763 TELVKVPLPVVAQTAPEQQEE 783
             +V    PV+A +AP  Q E
Sbjct: 875 --VVVAEEPVIAVSAPAPQTE 893



 Score = 92.4 bits (228), Expect = 1e-22
 Identities = 44/78 (56%), Positives = 56/78 (71%)

Query: 1  MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60
          +KRMLI+AT  EE RV +V+G RL +LD+E+    Q K NIY  K+ R+EPSL+AAFV+Y
Sbjct: 2  VKRMLIDATHPEETRVVVVNGTRLEELDVETSTKRQLKGNIYLAKVVRVEPSLQAAFVEY 61

Query: 61 GAERHGFLPLKEIAREYF 78
          G  RHGFL   EI  +YF
Sbjct: 62 GGNRHGFLAFSEIHPDYF 79