Pairwise Alignments

Query, 1061 a.a., fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) from Escherichia coli BW25113

Subject, 900 a.a., ribonuclease E/G from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  392 bits (1006), Expect = e-113
 Identities = 309/959 (32%), Positives = 450/959 (46%), Gaps = 127/959 (13%)

Query: 2   KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61
           K MLI+A   EE RVA+VDG+++ + D ES    Q + NIY  K+TR+EPSL+AAF++YG
Sbjct: 3   KTMLIDAAHPEETRVAIVDGRKIEEFDFESRAKRQLRGNIYLAKVTRVEPSLQAAFIEYG 62

Query: 62  AERHGFLPLKEIAREYFPANYS--------AHG--------------------------- 86
             RHGFL   EI  +Y+    +        AH                            
Sbjct: 63  GNRHGFLAFNEIHPDYYQIPVADREAIMAEAHDDEDEDDLDRESTGDDVDPESALADEER 122

Query: 87  -------RPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGI 139
                  R  I+DV++  Q ++VQ+ K+ERG KGAALTT++SLAG Y VLMPN  + GGI
Sbjct: 123 LKRRLMRRYKIQDVIKRRQILLVQVVKDERGAKGAALTTWLSLAGRYCVLMPNTGKGGGI 182

Query: 140 SRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAA 198
           SR+I    DR  LK A+++LE+P+GMGLI+RTAG  ++   ++ D  + L+ WE I++  
Sbjct: 183 SRKITNTSDRRRLKSAVSALEVPKGMGLIIRTAGAKRTKAEIKRDYQYLLRLWETIRETT 242

Query: 199 ESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKL 258
            +  AP +I++E N++ RA RD   +D   I ++  +  + AR  +  L  P  + K+ L
Sbjct: 243 LASHAPSVIYEEENLVRRAVRDMFDKDFDGIQVEGVEGFKEARDFMRVL-MPAQAKKVHL 301

Query: 259 YTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEET 318
           Y G  PLF+   IE  +    Q  V L SGG +VI+ TEAL AID+NS RAT+  ++E+T
Sbjct: 302 YRGSRPLFAANGIEELLTQIHQPVVPLKSGGYLVINQTEALVAIDVNSGRATKERNVEQT 361

Query: 319 AFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISH 378
           AF TN+EAA+E ARQLRLRDL GL+VIDFIDM   ++ RAVE  L+EA+  DRARIQ+  
Sbjct: 362 AFKTNMEAAEEAARQLRLRDLAGLVVIDFIDMDEGKNNRAVERVLKEALSSDRARIQMGR 421

Query: 379 ISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQE 438
           IS FGL+E+SRQR    + E +   CP C GTG +R  ES +L  LR ++ EA K     
Sbjct: 422 ISPFGLMEISRQRRRLGVIEGATEACPHCQGTGRIRSAESAALMTLRAVDIEAGKNGAGV 481

Query: 439 VHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTL 498
           V   V   +  Y+LN KR+ + ++  R+ G+  ++  +D +    +++ R    E+    
Sbjct: 482 VVLKVCTAVGLYILNHKRAYLQSLLERR-GLNVIVQIDDSLGQGEHNIERTETNEDFVAP 540

Query: 499 SYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAA 558
              +P L ++  A   E+E       E+         D     +     +    P  +  
Sbjct: 541 EIEMPNLDDDFDASLYEDE------DEEDDEEIIVDDDDDTVESLDREDSDDDEPRER-- 592

Query: 559 PATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRD 618
                +    G   R  G  +    G  + + ++  A    +  +   D     +N RR 
Sbjct: 593 -----SERHEGSRDRGRGRNRRRRGGRRDEETSDVEAVDTVSADDASDDEED--ENGRRR 645

Query: 619 RNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRE 678
           R  RR  R  R +G  +     R R      T    +     +     R+   +  P R 
Sbjct: 646 RRGRRGGRRVREDGERDVYTWVRGR------TPSLDDPYVWFDPLNPGRS---EGRPERG 696

Query: 679 RSRRRNDDKRQAQQEAKALNV--EEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVA 736
               R +    AQ E + L+V   E S +E  +  R R     R    ++ +++ E    
Sbjct: 697 ERPERAERPAVAQSEGEGLDVVPGEGSGEEGGRSRRRRRRGRGRGDGSVSHEIKVENRAT 756

Query: 737 EEAVV---APVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGG 793
            E +    +P     V  EP         TE V+   P +   APE Q            
Sbjct: 757 NEGMPPDGSPETPMAVMVEP---------TEAVETAAPAI---APEPQR----------- 793

Query: 794 MPRRSRRSPRHLRVSGQRRRRYRDERYPTQS--PMPLTVACASPELASGKVWIRYPIVRP 851
             RR RR       S         E +P  +  P   TV  A  EL              
Sbjct: 794 --RRVRRK------SASANVEIAAEPHPDTAIEPNEATVQGAPAEL-------------- 831

Query: 852 QDVQVEEQREQEEVHVQPMV--TEVPVAAAI--EPVVS-APVVEEVAGVVEAPVQVAEP 905
            DV   E    E   V P+   T VPV  A+  EP V+  P ++  A + E P Q+  P
Sbjct: 832 -DVTPHEALAAEPAEVAPVAAPTAVPVTEAVLAEPFVAPTPEIDVQAIIAEDPNQIVAP 889