Pairwise Alignments

Query, 1061 a.a., fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) from Escherichia coli BW25113

Subject, 977 a.a., ribonuclease E from Agrobacterium fabrum C58

 Score =  353 bits (907), Expect = e-101
 Identities = 249/704 (35%), Positives = 360/704 (51%), Gaps = 71/704 (10%)

Query: 90  IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDR 148
           I++V++  Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN  R GGISR+I +  DR
Sbjct: 269 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPTDR 328

Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208
             LKE    LE+P+GMG+I+RTAG  ++   ++ D  + ++ WE ++    +  AP L++
Sbjct: 329 KRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLNSTAPCLVY 388

Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268
           +E ++I R+ RD   +DI EI++   +    A+  +  L  P  +  ++ Y    P+FS 
Sbjct: 389 EEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKML-MPSHAKVVQPYRDIHPIFSR 447

Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328
             IE+Q++   Q +V L SGG ++I+ TEAL AID+NS R+TR   IEETA  TNLEAA+
Sbjct: 448 SGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALTTNLEAAE 507

Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388
           E+ARQLRLRDL GL+VIDFIDM   R+ R+VE +L++ ++ DRARIQ+  IS FGLLEMS
Sbjct: 508 EVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMS 567

Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448
           RQR+  S+ ES+  VC  C GTG VR   S++L +LR +EE  L+  T  +        A
Sbjct: 568 RQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITVRCTPETA 627

Query: 449 SYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLR---VRKGEETPTLSYMLPKL 505
            YLLN KR ++   E R  GV  +I  +  +   H+ + R   V    +  +L  MLP  
Sbjct: 628 LYLLNHKRGSIVDYEGR-FGVAIIIAADSSVGAQHFAIDRGEAVENPVKIESLIQMLPSF 686

Query: 506 HEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAP 565
            EE   +  E E  E +  E+   A  A P   P     E          +         
Sbjct: 687 VEEEDDIVIEVE--EDEEEEEIVKAESAQPRQQPQGDNGEDGKR-KRKRRRRRRGKGGQN 743

Query: 566 AQPGLLSRFFG-------------ALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPR 612
            Q G L    G              ++   +G +  +     A  A+   +R++ RR+ +
Sbjct: 744 EQNGALDGQSGNDAEDDDAEGDDDGVETDEAGADSDENGANEAANADEDGKRKR-RRRGK 802

Query: 613 QNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADE- 671
           +  RR+R++  D       G+D   E          + AE  E    A VTE+  TA E 
Sbjct: 803 RGGRRNRDDALD-----AAGADGETEG---------EGAEGEEVSTAAPVTEEPATAAEV 848

Query: 672 ----------QQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRK 721
                     ++AP++ R  R            KA    E   +E  + E V  V+P   
Sbjct: 849 VEGVVADVVAEEAPKKPRRTR------------KAKTKTETETEEAPKAETVETVEP--- 893

Query: 722 QRQLNQKVRYEQSVAEEAVVAPVVEET-VAAEPIVQEAPAPRTE 764
                  V  E  V E  VV   +EE   A+  +   A  P TE
Sbjct: 894 -------VIIEPVVVEATVVDVAIEEVGEASAGLAPGADVPGTE 930



 Score = 86.3 bits (212), Expect = 1e-20
 Identities = 40/76 (52%), Positives = 54/76 (71%)

Query: 3  RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62
          +MLI+A+ +EE RV +V G R+ + D ES   +Q + NIY  K+TR+EPSL+AAFVDYG 
Sbjct: 4  KMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGG 63

Query: 63 ERHGFLPLKEIAREYF 78
           RHGFL   EI  +Y+
Sbjct: 64 NRHGFLAFAEIHPDYY 79



 Score = 43.5 bits (101), Expect = 8e-08
 Identities = 47/217 (21%), Positives = 77/217 (35%), Gaps = 45/217 (20%)

Query: 587 ETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQA 646
           E    E+   KAE+   RQQ +    ++ +R R  RR  R +  +   N   + ++   A
Sbjct: 698 EEDEEEEEIVKAESAQPRQQPQGDNGEDGKRKRKRRRRRRGKGGQNEQNGALDGQSGNDA 757

Query: 647 QQQTAETRESRQQAEVT---------EKARTADEQQAPRRERSRRRNDDKRQAQQEAKAL 697
           +   AE  +   + +            +A  ADE    R+ R R +   +R       A 
Sbjct: 758 EDDDAEGDDDGVETDEAGADSDENGANEAANADED-GKRKRRRRGKRGGRRNRDDALDAA 816

Query: 698 NVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQE 757
             + ++  E  + E V    P                V EE   A  V E V A+ + +E
Sbjct: 817 GADGETEGEGAEGEEVSTAAP----------------VTEEPATAAEVVEGVVADVVAEE 860

Query: 758 AP-------------------APRTELVKVPLPVVAQ 775
           AP                   AP+ E V+   PV+ +
Sbjct: 861 APKKPRRTRKAKTKTETETEEAPKAETVETVEPVIIE 897



 Score = 28.9 bits (63), Expect = 0.002
 Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 21/140 (15%)

Query: 654 RESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERV 713
           R++  +AE  +  R+ D + A   E      D  +  Q +   +   E +  +    E V
Sbjct: 86  RQALLKAEAEDHRRSDDFESADAPESGAPMIDLSQVDQPDVGIVAASETT--DVAVTEEV 143

Query: 714 RPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVV 773
            PV                ++V+EE  V  V EE  A E    E P  R    +      
Sbjct: 144 APVS---------------EAVSEETAVEVVAEEAPAEE----EKPKKRVRRPRAKKKTA 184

Query: 774 AQTAPEQQEENNADNRDNGG 793
            + A E  E ++ D+   GG
Sbjct: 185 EEIAAEAAEASSEDDGSTGG 204