Pairwise Alignments

Query, 179 a.a., putative fimbrial-like protein (VIMSS) from Escherichia coli BW25113

Subject, 180 a.a., type 1 fimbriae major subunit FimA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  129 bits (325), Expect = 2e-35
 Identities = 73/180 (40%), Positives = 101/180 (56%), Gaps = 3/180 (1%)

Query: 1   MKKSVLTAFITVVC--ATSSVMAADDNAITDGSVTFNGKVIAPACTLVAATKDSVVTLPD 58
           MKK VL   ++ +      S   AD   +T G+V F G+V+  AC++ A + D  VTL  
Sbjct: 1   MKKPVLALMVSAIAFGGMLSTAQADTTTVTGGTVNFVGQVVDAACSVSADSVDQTVTLGQ 60

Query: 59  VSATKLQTNGQVSGVQIDVPIELKDCDTTVTKNATFTFNGTADTTQITAFANQASSDAAT 118
           V A+KL   G V+  + D  I+L+DCDT  ++NA   FNG  D  Q  + AN A + +AT
Sbjct: 61  VRASKLTEAGMVANQKEDFTIKLEDCDTQTSQNAAVIFNGQQDANQPGSLANTAGAGSAT 120

Query: 119 NVALQMYMNDGTTAITPDTETGNILLQDGDQTLTFKVDYIATGKATSGNVNAVTNFHINY 178
           NVALQ+Y  DG  A+     +  + L DG+  +   VDYIATG AT+GNV A   F + Y
Sbjct: 121 NVALQLYGPDG-QALNIGESSSTVTLNDGENVIPLSVDYIATGTATAGNVTATATFSMVY 179