Pairwise Alignments

Query, 306 a.a., predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) from Escherichia coli BW25113

Subject, 339 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Enterobacter asburiae PDN3

 Score =  274 bits (700), Expect = 2e-78
 Identities = 145/342 (42%), Positives = 212/342 (61%), Gaps = 40/342 (11%)

Query: 1   MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAG-----PEADAQVIELVRQQL 55
           ML ++++RL  +IPT   +++L F FVHM+PGDP  ++AG     PE  AQ++     +L
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLA----EL 56

Query: 56  GLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMA 115
           GLD+P++ Q+ HYI   + GD G+S+ SR PV DE   RF  TL L + +M++A   G+ 
Sbjct: 57  GLDKPMWQQYLHYIWGVLHGDLGISLKSRLPVWDEFVPRFKATLELGVCAMIFATAVGIP 116

Query: 116 AGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGA-------- 167
            G++AAV R    D  ++ +A++G S P F  GM+LI + SV+L   P  G         
Sbjct: 117 VGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVQLNLTPVSGRVSDMVFLD 176

Query: 168 -----------------------DSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDY 204
                                  D+  H ILP++ LG    AV+ R TR+S ++VL EDY
Sbjct: 177 DSNPLTGFMLIDTAIWGEEGNFIDAVAHMILPAMVLGTIPLAVIVRMTRSSMLEVLGEDY 236

Query: 205 MRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVD 264
           +RTARAKG++   V++ H LRNAM+PVVT++GLQ G LL G+I+ E +F+WPGLGR L+D
Sbjct: 237 IRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLID 296

Query: 265 SVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRYK 306
           +++ RDYPV+Q  +LL +   IL+NL+VD+LY  +NP IR+K
Sbjct: 297 ALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRHK 338