Pairwise Alignments

Query, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  485 bits (1249), Expect = e-141
 Identities = 261/463 (56%), Positives = 328/463 (70%), Gaps = 24/463 (5%)

Query: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
           MSF SLGLS  ++RA+   GY +PTP+QQ+AIPAVL+GRDLM +AQTGTGKT GF LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  QHLITR----QPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSIN 116
           + L       +    G R  R L+LTPTRELAAQ+ ++ + Y++ L + S  +FGGV +N
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 117 PQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTK 176
           PQ+  +  GVDVLVA PGRLLDL  Q  V L  VEILVLDEADRMLDMGFIHD+++VL +
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 177 LPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELL 236
           LPAKRQNLLFSATFS DI  LA+KLLHNP  IEV   NT  +++ Q V+ +    KR LL
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240

Query: 237 SHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296
           +H+I  G W+QVLVFTRTKHGAN LAE L K G+ +AAIHGNKSQ ART+ALADFK+  +
Sbjct: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300

Query: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356
           RVLVATDIAARGLDI++LPHVVN+ELPNV EDYVHRIGRTGRA  +GEA+SLV  DE KL
Sbjct: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 357 LRDIEKLLKKEIPRIAIPGYEPD------PSIKAEPIQNGR-----QQRGGGGRGQGGGR 405
           L+ IE++ K+ I    + G++        P  +  P  NGR     Q RG GG+   GGR
Sbjct: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGEGGKDTNGGR 420

Query: 406 GQQQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPR 448
             +   +G+   + A+AKP +K        + +G++Q+ R+PR
Sbjct: 421 KDKGKDKGK-ARQQAAAKPDDK--------EKSGDKQQPRKPR 454