Pairwise Alignments

Query, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

Subject, 487 a.a., DEAD/DEAH box helicase from Paraburkholderia sabiae LMG 24235

 Score =  417 bits (1071), Expect = e-121
 Identities = 230/488 (47%), Positives = 307/488 (62%), Gaps = 39/488 (7%)

Query: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
           MSF SLGL   +LR + ++ Y+ PTP+Q +AIP VL G+D+MA+AQTGTGKTAGF LPLL
Sbjct: 1   MSFASLGLIDPLLRNLQDRNYQTPTPVQAKAIPVVLNGKDVMAAAQTGTGKTAGFALPLL 60

Query: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120
           Q L+   P     R  R L+L PTRELA Q+ ++  +Y K L++R L  +GGVSINPQMM
Sbjct: 61  QRLVQNGPAVSSNR-ARVLVLVPTRELAEQVLQSFIEYGKGLDLRFLAAYGGVSINPQMM 119

Query: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180
           KLR GVDVLVATPGRLLDL  QNAV+ DQV+ LVLDEADRMLD+GF  ++  V   LPA+
Sbjct: 120 KLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAR 179

Query: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240
           RQ LLFSATF+DDI+A+A  +L +P+ I V+  N  + ++ Q V  VDK+ K EL  H++
Sbjct: 180 RQTLLFSATFTDDIRAMAAGILRDPVNISVSPPNATASKIRQWVVPVDKRNKPELFMHLV 239

Query: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
            + NW+  LVF +T++G ++LA  L++ G     IHG+K Q AR RAL  FK+ ++++LV
Sbjct: 240 AENNWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTREVQMLV 299

Query: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
           ATD+AARGLDI++LP V+N +LP V +DYVHRIGRTGRA A+G A+SLVC DE   L  I
Sbjct: 300 ATDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAI 359

Query: 361 EKLLKKEIPRIAIPGYEPD----------------------------------PSIKAEP 386
           E L+++ +PR   PG+E +                                  PS K  P
Sbjct: 360 EALIRQTLPREEEPGFEAEHRVPETSATGQIIKKPKKPKKPKVPQVALGATQTPSKKPRP 419

Query: 387 --IQNGRQQRGGGGRGQGGGRGQQQPRRGEGGAKSASAKPAEKPSRR--LGDAKPAGEQQ 442
             ++N R+       G G             G+  ++ KP  KP+ +   G  KPAG+  
Sbjct: 420 QGVENKRKPAAQRAVGAGKVASSTSGTDFTSGSPFSTQKPRSKPATKPAAGSHKPAGKPA 479

Query: 443 RRRRPRKP 450
             R  R+P
Sbjct: 480 GGRGKRQP 487