Pairwise Alignments

Query, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

Subject, 608 a.a., ATP-dependent RNA helicase RhlE from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  488 bits (1257), Expect = e-142
 Identities = 265/501 (52%), Positives = 338/501 (67%), Gaps = 54/501 (10%)

Query: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
           M+FD L L+P I++AV E GY  PTPIQ +AIPAVL GRDL+  AQTGTGKTA FTLP+L
Sbjct: 15  MTFDDLNLAPAIVQAVREHGYETPTPIQVEAIPAVLAGRDLLGGAQTGTGKTAAFTLPML 74

Query: 61  QHLITRQPHAKGRRP---VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINP 117
            H +     AK R     +RAL+LTPTRELAAQ+ E+VR Y K+L++ S VVFGGV +NP
Sbjct: 75  -HRLANSERAKSRFGGVGIRALVLTPTRELAAQVEESVRVYGKHLSLTSTVVFGGVGMNP 133

Query: 118 QMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKL 177
           Q+  ++ GVD+LVATPGRLLDL+ Q  + L  V++LVLDEADRMLDMGFIHD++++L  +
Sbjct: 134 QINAMKRGVDILVATPGRLLDLQQQGFLDLSTVQMLVLDEADRMLDMGFIHDVKKILALV 193

Query: 178 PAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLS 237
           P ++Q+LLFSATFSD+I+ LA  LL +PL I+V  RNT   ++TQ +H V + +K+ LL 
Sbjct: 194 PKEKQSLLFSATFSDEIRDLASALLKDPLHIQVTPRNTTVQRITQVIHPVGRGKKKALLV 253

Query: 238 HMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297
           H+I + NW QVLVFTRTK GAN++AE L K+GI + A+HGNKSQGART+ALA FKSG+IR
Sbjct: 254 HIINQHNWSQVLVFTRTKFGANNVAEYLTKNGIHAMALHGNKSQGARTQALAGFKSGEIR 313

Query: 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLL 357
            LVATDIAARG+DI+ELPHVVNYE+PN+ EDYVHRIGRTGRA  +GEA++LV +DE   +
Sbjct: 314 ALVATDIAARGIDIDELPHVVNYEIPNISEDYVHRIGRTGRAGNSGEAVNLVSLDEEGFM 373

Query: 358 RDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGG-------------------- 397
            +IE+  K++IP    P + P+P  KAEPI  GRQ   GG                    
Sbjct: 374 MEIERFTKQQIPVQIFPEFMPEPGEKAEPIAMGRQTIWGGAGKPPSREVMAAAAKAARTE 433

Query: 398 --------------GRGQGGGRGQQQ---------------PRRGEGGAKSASAKPAEKP 428
                         GRG GGG GQ+Q                RRG GG + A+       
Sbjct: 434 MLQRVREKKANEPQGRGNGGGGGQRQRPAGDGSQADGPRGEGRRGNGGGQRANGNGGGGN 493

Query: 429 SRRLGDAKPAGEQQRRRRPRK 449
            +R G  +  G QQ +R PR+
Sbjct: 494 GQRQGQ-RHGGGQQGQRPPRE 513



 Score = 36.2 bits (82), Expect = 3e-06
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 364 LKKEIPRIAIPGYEPDP-SIKAEPIQNGRQQRGGGGRGQGGGRGQQQPRRG 413
           +++  PR A PG +PDP     + ++ G   RGG G+G GGG GQ+    G
Sbjct: 546 IREPRPRAANPGGQPDPLRTSIDAMRTG--NRGGKGKGGGGGGGQRGGNAG 594