Pairwise Alignments

Query, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

Subject, 434 a.a., Superfamily II DNA and RNA helicases from Kangiella aquimarina DSM 16071

 Score =  437 bits (1125), Expect = e-127
 Identities = 231/437 (52%), Positives = 306/437 (70%), Gaps = 12/437 (2%)

Query: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
           M F  L L   +L A+ + GY  P+PIQQ+ IP +L GRD+MA+AQTGTGKTAGF LP+L
Sbjct: 1   MPFSKLDLIQPLLDALHKSGYTTPSPIQQKVIPLILNGRDIMAAAQTGTGKTAGFALPVL 60

Query: 61  QHLITRQPHAKGRR----PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSIN 116
           Q L      ++G+R      R LILTPTRELA Q+ ++V+ Y+  L+++S+VV+GGV IN
Sbjct: 61  QRL------SEGKRVSANSARCLILTPTRELAEQVHQSVQKYAANLSLKSVVVYGGVKIN 114

Query: 117 PQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTK 176
           PQM+KLR G DVLVATPGRLLDL  QNAV    +E LVLDEADRMLDMGF+  I+R++ K
Sbjct: 115 PQMLKLRRGTDVLVATPGRLLDLMEQNAVSFTDLEFLVLDEADRMLDMGFLPSIKRIIGK 174

Query: 177 LPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELL 236
           LP  RQ LLFSATFS+ IKA++++ L NP  +E  + NT +  V Q ++ VDKK+K  LL
Sbjct: 175 LPKNRQTLLFSATFSESIKAISQQFLTNPALVETGQTNTTATTVKQWIYPVDKKQKPALL 234

Query: 237 SHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296
           S++IG   W Q+LVF RT+ GAN L+  L+K GI++ AIHG KSQGAR RALA+FKSG++
Sbjct: 235 SYLIGHHRWDQLLVFVRTRRGANRLSVDLDKRGIKATAIHGGKSQGARNRALAEFKSGEV 294

Query: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356
            VLVATD+AARGLDIE++P V+NY+LPNV EDYVHRIGRTGRA   G A+SLV  DE   
Sbjct: 295 TVLVATDVAARGLDIEQMPLVINYDLPNVAEDYVHRIGRTGRAGEKGSAISLVSADEVDD 354

Query: 357 LRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGRGQQQPRRGEGG 416
           LR I+ L+++++ R    G+EP  S+   P+++ R+++    +       Q   + G   
Sbjct: 355 LRAIQDLIRQQLERRIADGFEPQHSLPETPLKSPRKKKPHKKKLAKAQLNQANKKSGVSQ 414

Query: 417 AKSASAKPAEKPSRRLG 433
            K+   KP  KP+ + G
Sbjct: 415 NKNKRRKP--KPTNKAG 429