Pairwise Alignments

Query, 379 a.a., cytochrome d terminal oxidase, subunit II (NCBI) from Escherichia coli BW25113

Subject, 385 a.a., cytochrome d oxidase subunit II from Agrobacterium fabrum C58

 Score =  391 bits (1004), Expect = e-113
 Identities = 189/380 (49%), Positives = 256/380 (67%), Gaps = 1/380 (0%)

Query: 1   MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60
           +IDYE+LR IWWLL+GVLLIGFAVT GFD+G G L  F+ + D ERR++INSI P W+GN
Sbjct: 6   LIDYEILRVIWWLLLGVLLIGFAVTGGFDLGTGALLPFVAKTDIERRVVINSIGPVWEGN 65

Query: 61  QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120
           QVWLI  GGA+FAAWP +YA +FSGFY+AM   L +L  RPVGF YRSK E   WR+ WD
Sbjct: 66  QVWLILGGGAIFAAWPPLYAVSFSGFYLAMFATLFALILRPVGFKYRSKRESPAWRSGWD 125

Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTG-NFFQLLNPFGLLAGVVSVGM 179
           W +F+G FVP L+ GVA GN+LQGVPF+ ++ LR++Y G   F+LLNP+ LL G+VSV M
Sbjct: 126 WALFVGGFVPALIFGVAIGNVLQGVPFHFNDDLRIFYDGTTLFELLNPYALLCGLVSVSM 185

Query: 180 IITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYA 239
           ++  GA +L ++T G +  R R+   +AAL T V FAL GV++  G+DGY   S +    
Sbjct: 186 LVMHGAAWLVLKTEGPVAARARSFGSIAALATTVLFALGGVFLWLGVDGYRFTSEVVTDG 245

Query: 240 ASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299
            SNPL+K V    G W  N+   P +   PALG+V PL   +  R  +   A + SSL +
Sbjct: 246 PSNPLSKTVEVAGGVWFANYAAHPWMMLAPALGLVFPLFAFILFRARREVLALLSSSLAI 305

Query: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359
             II T G+ MFPF++PSS    +SLT+WDA+SS +TL  M  V ++ VP+I+ YT+W Y
Sbjct: 306 FGIIATVGLTMFPFILPSSVDPRSSLTVWDASSSHMTLFNMLVVTLIFVPMIVAYTSWVY 365

Query: 360 WKMFGRITKEDIERNTHSLY 379
             ++G++ ++ I  ++   Y
Sbjct: 366 RVLWGKVDEKAIRDDSGHAY 385