Pairwise Alignments

Query, 468 a.a., predicted outer membrane porin (NCBI) from Escherichia coli BW25113

Subject, 432 a.a., porin from Pseudomonas simiae WCS417

 Score = 62.8 bits (151), Expect = 2e-14
 Identities = 108/480 (22%), Positives = 182/480 (37%), Gaps = 96/480 (20%)

Query: 7   KRSTLALAI-AGVTAMSGFMAMPEARAEGFIDDSTL---TGGIYYWQRERDRKDVTDGDK 62
           K S +ALA+ AG T  +  MA  ++ ++GF++DST    T  +Y+    RD ++   G  
Sbjct: 5   KWSMIALAVSAGTTQFA--MASAQSDSKGFVEDSTFSINTRALYF---SRDFRNNPSGPG 59

Query: 63  YKTNLSHSTWNANLDFQSGYAADMFGL--DIAAFTAIEMAENGDSSHPNEIAFSKSNKAY 120
            ++    +    N  +QSG+     G+  D+     +++ ++G       +  + S+   
Sbjct: 60  SQSRAEETGLGFNALYQSGFTQGTIGVGVDVIGLLGVKL-DSGKGRAGTGLFPTGSDGRS 118

Query: 121 DEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGANF 180
            +D+S  K G      A KF+      + G    T     +     +P   QG    +N 
Sbjct: 119 QDDYS--KGG-----GAVKFRISDTVLKVGDQYTTAPVFASDDSRLLPELPQGISITSNE 171

Query: 181 DYG---DAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSFGAKYDFKNNFVLE 237
             G   + G  + S      Y     L           TK D++   G  Y F   F   
Sbjct: 172 IKGLKLEGGHFTSSVAQNQTYHDSLGL-----------TKTDFV---GGVYSFTPEFTGS 217

Query: 238 AAFGQAEGYIDQYFAKASYKFDIA-----------------GSPLTTSYQFYGT----RD 276
             + + E Y  +Y++  ++   ++                 G  L  +Y+  G     R 
Sbjct: 218 LYYAKTEDYFRKYYSNLNWTHALSDDQSFALDFNIYDTKSDGEGLQRAYKDNGLPFAERT 277

Query: 277 KVDDRSVNDLYDGTAWLQALTFGYRAADVVDLRLEGTWVKADGQQGYFLQRMTPTYASSN 336
           K+D+R+ +    G   + A TF   A  V            DG  GY +      + +++
Sbjct: 278 KLDNRAFS--LQGAYTIGAHTFTLAAQKVT----------GDGDYGYGVDGGGTVFLANS 325

Query: 337 GRLDIWWDNRSDFNANGEKAVFFGAMYDLK--NWNLPGFAIGASYVYAWDAKPATWQSNP 394
                    RSDFNA GEK+  + A YD+    + +PG +    YV    A  AT  +  
Sbjct: 326 IA-------RSDFNAEGEKS--YQARYDINMATFGIPGLSFMTRYVTGSGANTATTSNG- 375

Query: 395 DAYYDKNRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNIFQDE 454
                     +E    ++A Y IQ G AK    ++    Y +     S G  YG+   DE
Sbjct: 376 ----------KEWERDIEAKYVIQSGPAKDLSLRIRQATYRS-----SDGVYYGSSSIDE 420