Pairwise Alignments

Query, 468 a.a., predicted outer membrane porin (NCBI) from Escherichia coli BW25113

Subject, 440 a.a., porin from Pseudomonas simiae WCS417

 Score = 57.0 bits (136), Expect = 1e-12
 Identities = 102/445 (22%), Positives = 172/445 (38%), Gaps = 64/445 (14%)

Query: 9   STLALAI-AGVTAMSGFMAMPE-ARAEGFIDDSTLTGGI--YYWQRERD--RKDVTDGDK 62
           S LALA+ AG++ M+   ++ + A ++GFI+ S++TG +  YY  R R+  R D  D   
Sbjct: 6   SLLALAVCAGISQMAFAESVTDQADSKGFIEGSSVTGLLRNYYMNRNREGGRADNIDW-- 63

Query: 63  YKTNLSHSTWNANLDFQSGYAADM--FGLDIAAFTAIEMAENGDSSHPNEIAFSKSNKAY 120
                   T  A L++ SG+      FG+D  A+  +++    D++H +           
Sbjct: 64  --------TQGAMLNYASGFTQGTIGFGVDAYAYGGLKL----DATHAD-----AGTGNL 106

Query: 121 DEDWSGD-KSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAE---- 175
             D  GD +       AA K K      + G +QPT           +P T  G +    
Sbjct: 107 PTDRHGDPEDAYGSVGAAVKIKVSKTQLKFGDMQPTAPVFATGGTRLLPQTATGFDLTSS 166

Query: 176 --AGANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSFGAKYDFKNN 233
             AG + + G   + +      +++      ++   Y N       +L   G KY F  +
Sbjct: 167 EIAGLDLEAGHFTSTNSGMTSNHDH------DIYATYANIAANSASFL---GGKYTFSPS 217

Query: 234 FVLEAAFGQAEGYIDQYFAKASYKFDIA-GSPLTTSYQFYGTRDKVDDRSVNDLYDGTAW 292
                  G+ E    QY+   +Y   +     L      Y T D    ++     + T +
Sbjct: 218 LSATVYAGELEDIWRQYYTNLNYVIPLVHDQSLALDGNLYRTLDTGSAKA--GAINNTTY 275

Query: 293 LQALTFGYRAADVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNR---SDF 349
             A  + +  A  + L  +   V  D    Y     T    +  G   ++  N     DF
Sbjct: 276 SLAAAYSFLQAHTLTLSFQK--VHGDTPFDYI---GTGNNGAGEGGDSVYLANSVQWGDF 330

Query: 350 NANGEKAVFFGAMYDLK--NWNLPGFAIGASYVYAWDAKPATWQSNPDAY---YDKNRTI 404
           N  GE++  +G  YDL   ++ +PG +    Y+   D    T   +  AY   Y  +   
Sbjct: 331 NGPGEQS--WGIRYDLNMASYGVPGLSFMGRYINGSDIN-GTHTPDHSAYAGDYGDDGAH 387

Query: 405 EESAYSLDAVYTIQDGRAKGTMFKL 429
            E+   L+A Y IQ G AK    ++
Sbjct: 388 HET--DLEAKYVIQSGPAKNLSLRV 410