Pairwise Alignments

Query, 468 a.a., predicted outer membrane porin (NCBI) from Escherichia coli BW25113

Subject, 417 a.a., putative Porin from Pseudomonas putida KT2440

 Score = 50.8 bits (120), Expect = 8e-11
 Identities = 60/258 (23%), Positives = 98/258 (37%), Gaps = 20/258 (7%)

Query: 27  MPEARAEGFIDDSTLT---GGIYYWQRERDRKDVTDGDKYKTNLSHSTWNAN--LDFQSG 81
           +P A A GFI+DS L      +Y+ +  RD + ++             W     LD+QSG
Sbjct: 18  LPVAGAAGFIEDSKLKLQLRNVYFNENFRDEQGMSARAAATAKSERVEWAQGFLLDYQSG 77

Query: 82  YAADMFGLDIAAF--TAIEMAENGDSSHPNEIAFSKSNKAYDEDWSGDKSGISLYKAAAK 139
           +     GL + A     + +      S    +      +A DE  S   +GI+     AK
Sbjct: 78  FTQGTLGLGVDAMGLLGVRLDSGRGRSGTGLLPVHDDGRAADEFAS---AGIT-----AK 129

Query: 140 FKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGANFDYGDAGALSFSYMWTNEYK 199
            + G    + G + P    L+      +P TYQG +  +     D   L+ +    + +K
Sbjct: 130 ARLGSTVVKHGTLLPKTPVLVYNDARLLPQTYQGTQLTST----DIDNLTLTAGHLDRFK 185

Query: 200 APWHLEMDEFYQNDKTTKVDYLHSF-GAKYDFKNNFVLEAAFGQAEGYIDQYFAKASYKF 258
                +    Y +          SF GA Y       L    G+ E +  Q FA   +  
Sbjct: 186 QRDSSDSTGLYLDGYGGPASGDFSFAGADYAVSKQLRLSYFHGELEHFYRQDFAGLVHDL 245

Query: 259 DIAGSPLTTSYQFYGTRD 276
            + G  LTT  +++ +RD
Sbjct: 246 PLGGGVLTTDLRYFKSRD 263