Pairwise Alignments

Query, 468 a.a., predicted outer membrane porin (NCBI) from Escherichia coli BW25113

Subject, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score = 57.0 bits (136), Expect = 1e-12
 Identities = 100/476 (21%), Positives = 172/476 (36%), Gaps = 54/476 (11%)

Query: 8   RSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGGIYYWQRERDRKDVTDGDKYKTNL 67
           ++ ++L    + A +   A  +A ++GFI+DS     +      RD+K  TD        
Sbjct: 3   KTRISLVALAMIAATQAQANDQADSKGFIEDSHANVLLRNAYINRDKKHGTD-------- 54

Query: 68  SHSTWNANL--DFQSGYAADMFGLDIAAFTAIEMAENGDSSHPNE--IAFSKSNKAYDED 123
               W      +F SG+     G+ + AF    +  +G   H     + F K ++  + +
Sbjct: 55  DQIEWGQAFIANFSSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGGGVDFFKPHETTNAE 114

Query: 124 WSGDKS-GISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGANFDY 182
            +      ++   AA KF+      + G   P    L       +P ++ G    +    
Sbjct: 115 GNASSPHNLARGGAAVKFRISNTVLKYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQ 174

Query: 183 G---DAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSFGAKYDFKNNFVLEAA 239
           G   +AG  +     + E +    L+               ++  G  Y F +NF     
Sbjct: 175 GLELNAGRFTQEARKSAERRDGGGLKS--------------INVLGGSYKFTDNFTASLY 220

Query: 240 FGQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRDKVDDRSVNDLY----DGTAWLQA 295
               E  + +++   +Y F IA S  + +  F G +  ++++ V          T W  A
Sbjct: 221 TADNEDVMKKHYLGLNYVFPIA-SDQSLTLDFNGYKSDINNKYVKAAGLNGDSNTIWSLA 279

Query: 296 LTFGYRAADVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNR--SDFNANG 353
            T+ Y A          T     G  GY            +G   I+  N   SDFNA  
Sbjct: 280 ATYAYGAHSFTLAHQRST-----GSTGYNYGFYQNAGGVGDGGSTIYLANSYWSDFNAED 334

Query: 354 EKAVFFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQSNPDAYYD-KNRTIEESAYSLD 412
           E++   G   D   + +PG     +YV   D       +NP  + + K R I        
Sbjct: 335 ERSWQLGYGLDFGAYGIPGLTYKLAYVVG-DNINTRNVANPQGFGEGKEREIFNQIR--- 390

Query: 413 AVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNIFQDERDVKFMVIAPFTIF 468
             Y +QDG AK    KL  +    ++ +     GY +   D  +V+  V  P +IF
Sbjct: 391 --YVVQDGPAKDLSIKLRSSFLRTNNAVQQ--NGYND---DGNEVRVFVEYPISIF 439