Pairwise Alignments

Query, 468 a.a., predicted outer membrane porin (NCBI) from Escherichia coli BW25113

Subject, 467 a.a., outer membrane porin, OprD family from Serratia liquefaciens MT49

 Score =  745 bits (1923), Expect = 0.0
 Identities = 352/473 (74%), Positives = 402/473 (84%), Gaps = 11/473 (2%)

Query: 1   MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGGIYYWQRERDRKDVT-- 58
           M T   +R TLALA+AG    +GF   PEA+A GFIDDST+TGG+YYWQRERDRKD+   
Sbjct: 1   MGTHGAQRKTLALAVAGALLGTGFAMAPEAKAAGFIDDSTMTGGVYYWQRERDRKDLNPT 60

Query: 59  --DGDKYKTNLSHSTWNANLDFQSGYAADMFGLDIAAFTAIEMAENGDSSHPNEIAFSKS 116
             D +KY TNLSHST N +LDF SGYA DMFGLD+ AFTAIE+AE+  S HPNEIAFS  
Sbjct: 61  SDDYNKYTTNLSHSTANLSLDFASGYAWDMFGLDVGAFTAIELAESSASGHPNEIAFSSK 120

Query: 117 NKAYDEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEA 176
           N+ YDED+SGDK GISLYKAA KFKYGPVWAR GYIQP+GQTLLAPHWSFMPGTYQGAEA
Sbjct: 121 NRTYDEDYSGDKGGISLYKAAGKFKYGPVWARGGYIQPSGQTLLAPHWSFMPGTYQGAEA 180

Query: 177 GANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSFGAKYDFKNNFVL 236
           GA FDYGDAG LSFSYMWTN+YKAPWH+EMD+F QNDK T V YLHS GAKYDFKN+ VL
Sbjct: 181 GAKFDYGDAGELSFSYMWTNKYKAPWHIEMDDFRQNDKKTGVSYLHSLGAKYDFKNDLVL 240

Query: 237 EAAFGQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRDKVDDRS-VNDLYDGTAWLQA 295
           EAAFGQA+GY++QYF KASYKFD+ G+PLTTSYQFYGT D+++D++  N +YDG AWLQA
Sbjct: 241 EAAFGQAQGYVNQYFTKASYKFDLVGNPLTTSYQFYGTEDRINDKNDPNSIYDGLAWLQA 300

Query: 296 LTFGYRAADVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEK 355
           LTFGY      + RLEGT VKA+G QGYFLQRMTPTYASSNGRLD+WWDNRSDFNANGEK
Sbjct: 301 LTFGYTTGQ-FNWRLEGTMVKAEGNQGYFLQRMTPTYASSNGRLDVWWDNRSDFNANGEK 359

Query: 356 AVFFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQSNPDAYYDKNRTIEESAYSLDAVY 415
           AV+ G MYDL NWNLPG A+G SYVYAWDAKP+T   NP   YD+++ ++ESA+SLDA+Y
Sbjct: 360 AVYAGVMYDLSNWNLPGMAVGGSYVYAWDAKPST---NP--MYDQSQRLKESAWSLDAMY 414

Query: 416 TIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNIFQDERDVKFMVIAPFTIF 468
           TIQ+GRAKGT+ KLH+T+YDNH++IPSWGGGYGNIFQDE+DVKFMVIAPFTIF
Sbjct: 415 TIQEGRAKGTLLKLHYTQYDNHTNIPSWGGGYGNIFQDEKDVKFMVIAPFTIF 467