Pairwise Alignments

Query, 1049 a.a., multidrug efflux system protein (NCBI) from Escherichia coli BW25113

Subject, 1037 a.a., multidrug efflux RND transporter permease AcrD from Serratia liquefaciens MT49

 Score = 1348 bits (3488), Expect = 0.0
 Identities = 683/1033 (66%), Positives = 842/1033 (81%), Gaps = 3/1033 (0%)

Query: 1    MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDT 60
            M NFFIDRPIFAWV+AII+ L G LAI  LPV QYP +APP V ISA+YPGA A+T+++T
Sbjct: 1    MANFFIDRPIFAWVLAIILCLTGALAIFSLPVEQYPNLAPPNVRISANYPGASAQTLENT 60

Query: 61   VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQ 120
            VTQ+IEQNM G+DN+MYMSS S +TG   +TLTFE+GTD + A  QVQN+LQ A+  LPQ
Sbjct: 61   VTQIIEQNMTGLDNMMYMSSQSTNTGRATVTLTFEAGTDPNEAMQQVQNQLQAAIKRLPQ 120

Query: 121  EVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVGDVQLFGS 180
             VQ QGV+V KS  + LM+V  ++TDG+M ++DI+DY+ +N++D +SR +GVG + ++GS
Sbjct: 121  AVQTQGVTVSKSGDTTLMMVAFVSTDGSMDKQDIADYIVSNLQDPLSRINGVGSMDVYGS 180

Query: 181  QYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRL 240
            QYAMRIW++PN+LN +QLT  DV++AI++QNAQVA GQLGGTP V  Q LNA+I AQ++L
Sbjct: 181  QYAMRIWLDPNKLNSYQLTTQDVVSAIQSQNAQVAVGQLGGTPSVDKQALNATINAQSQL 240

Query: 241  TSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANAL 300
             + E+F +I L+VNQDGS V L DV+ IELGGENYD ++ +NG  A+G+ IKLA+GAN L
Sbjct: 241  QTPEQFKQITLRVNQDGSLVTLGDVSTIELGGENYDYLSRYNGMQAAGMNIKLASGANEL 300

Query: 301  DTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQ 360
             T   ++ ++ ++  +FP GL+    Y+TTPFVK SI +VVKTL+EAI+LVFLVMYLFLQ
Sbjct: 301  QTDQLVKDKIDELSQYFPHGLEAKVAYETTPFVKASIKDVVKTLLEAIVLVFLVMYLFLQ 360

Query: 361  NFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            NFRATLIPTIAVPVVL+GTFA+L+A GFSINTLTMF MVLAIGLLVDDAIVVVENVERVM
Sbjct: 361  NFRATLIPTIAVPVVLMGTFAILSACGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  AEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMAL 480
            +EEGLPP+EATRKSMGQIQ ALVGIAMVLSAVF+PMAFFGG+TGAIYRQFSITIVSAM L
Sbjct: 421  SEEGLPPREATRKSMGQIQSALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVL 480

Query: 481  SVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGR 540
            SVLVA+ILTPALCAT+LKPIAKG H  GK+GFFGWFNRMF ++   Y   V  +L S+ R
Sbjct: 481  SVLVAMILTPALCATLLKPIAKGHH-HGKRGFFGWFNRMFNRNADRYERGVARVLHSSLR 539

Query: 541  YLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLT 600
            Y+++Y++++ GMA LF++LP+SFLP ED+GVF   VQLP G+T ++T KV+ +V +Y+LT
Sbjct: 540  YMLIYVLLLGGMALLFIKLPTSFLPQEDRGVFTVQVQLPPGSTLQQTTKVVEKVENYFLT 599

Query: 601  KEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKD 660
            KEK +V SVF+  G G  G GQN    F+ LKDW  R    N    I  RAT  F++I +
Sbjct: 600  KEKEDVLSVFSTIGAGPGGNGQNVARMFIRLKDWELRTSGANSSFDIIDRATHEFNKINE 659

Query: 661  AMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNG 720
            A V A + PAI  LG ++GFD EL D AGLGH+KL  AR+QLL  AA +P +L+ VR NG
Sbjct: 660  ARVIASSPPAITGLGNSSGFDMELEDHAGLGHDKLMAARDQLLQLAAANP-LLSRVRHNG 718

Query: 721  LEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYR 780
            L+D+PQ +IDIDQ KAQALGVSI+DIN TL  AWG +YVNDF+DRGRVKKVYV + A +R
Sbjct: 719  LDDSPQLQIDIDQRKAQALGVSIDDINNTLSTAWGSTYVNDFVDRGRVKKVYVQAAAPFR 778

Query: 781  MLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEA 840
            MLP DI  WYVR + G MVPF+AF++S WEYGSPRLERYNG  ++EI+G+AA G S+G A
Sbjct: 779  MLPGDIDKWYVRNSAGGMVPFTAFATSHWEYGSPRLERYNGNSALEIVGEAAEGVSSGTA 838

Query: 841  MELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFS 900
            M  ME++ S+LPTG G +WT MSYQERLSG+QAP+LYAISL+VVFLCLAALYESWSIPFS
Sbjct: 839  MAEMEKIVSQLPTGFGLEWTAMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFS 898

Query: 901  VMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGL 960
            VMLVVPLG+IGA+ A   RGL NDVYFQVG+LT IGLSAKNAILIVEFA +L +++G+ L
Sbjct: 899  VMLVVPLGLIGAVAATWLRGLENDVYFQVGMLTIIGLSAKNAILIVEFANEL-NQKGQDL 957

Query: 961  IEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIF 1020
            + ATL+A RMRLRPILMTSLAFI GV+P+ IS+GAGSG+Q+AVGTGVMGGM++AT+LAIF
Sbjct: 958  MSATLEASRMRLRPILMTSLAFIFGVLPMTISSGAGSGSQHAVGTGVMGGMISATLLAIF 1017

Query: 1021 FVPVFFVVVRRRF 1033
            FVP+FFV+VRRRF
Sbjct: 1018 FVPLFFVLVRRRF 1030