Pairwise Alignments

Query, 1049 a.a., multidrug efflux system protein (NCBI) from Escherichia coli BW25113

Subject, 1037 a.a., RND efflux system, inner membrane transporter CmeB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1339 bits (3466), Expect = 0.0
 Identities = 686/1036 (66%), Positives = 831/1036 (80%), Gaps = 3/1036 (0%)

Query: 1    MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDT 60
            M NFFIDRPIFAWV+AI++ L G LAI  LPV QYP +APP V I+A+YPGA A+T+++T
Sbjct: 1    MANFFIDRPIFAWVLAILLCLTGALAIFSLPVEQYPDLAPPNVRITANYPGASAQTLENT 60

Query: 61   VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQ 120
            VTQVIEQNM G+DNLMYMSS S  TG   ITL+F +GTD D A  QVQN+LQ AM  LPQ
Sbjct: 61   VTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQNQLQSAMRKLPQ 120

Query: 121  EVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVGDVQLFGS 180
             VQ QGV+V K+  + ++ +  ++TDG+M ++DI+DYVA+N++D +SR +GVGD+  +GS
Sbjct: 121  AVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGS 180

Query: 181  QYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRL 240
            QY+MRIW++P +LN FQ+T  DV  AI++QNAQ+A GQLGGTP V  Q LNA+I AQ+ L
Sbjct: 181  QYSMRIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSLL 240

Query: 241  TSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANAL 300
             + ++F  I L+VNQDGS V L DVA +ELG E YD ++ FNG PASGLG+KLA+GAN +
Sbjct: 241  QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEM 300

Query: 301  DTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQ 360
             TA  +   L ++  +FP GL+    Y+TT FVK SI +VVKTL+EAI LVFLVMYLFLQ
Sbjct: 301  ATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQ 360

Query: 361  NFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            NFRATLIPTIAVPVVL+GTF+VL AFG+SINTLTMF MVLAIGLLVDDAIVVVENVER+M
Sbjct: 361  NFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERIM 420

Query: 421  AEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMAL 480
            +EEGL P+EATRKSMGQIQGALVGIAMVLSAVFVPMAFFGG+TGAIYRQFSITIVSAM L
Sbjct: 421  SEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVL 480

Query: 481  SVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGR 540
            SVLVA+ILTPALCAT+LKP+ KG+   G++GFFGWFNR F ++   Y   V  IL  + R
Sbjct: 481  SVLVAMILTPALCATLLKPLHKGEQ-HGQRGFFGWFNRTFNRNAERYEKGVAKILHRSLR 539

Query: 541  YLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLT 600
            ++++Y++++ GM +LF+RLP+SFLP ED+G+F T +QLP+G+TQ++T KV+ +V +YY T
Sbjct: 540  WILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSIQLPSGSTQQQTLKVVEKVENYYFT 599

Query: 601  KEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKD 660
             EK+N+ SVF+  G G  G GQN    FV LKDW  R        AI  RAT+AF+QIK+
Sbjct: 600  HEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDARDPTTGSSFAIIERATKAFNQIKE 659

Query: 661  AMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNG 720
            A VFA + PAI  LG++ GFD EL D AG GH+ L  AR+QL+  A K+   LT VR NG
Sbjct: 660  ARVFASSPPAISGLGSSAGFDMELQDHAGAGHDALMAARDQLIELAGKN-SSLTRVRHNG 718

Query: 721  LEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYR 780
            L+D+PQ +IDIDQ KAQALGVSI+DIN TL  AWG SYVNDF+DRGRVKKVYV + AKYR
Sbjct: 719  LDDSPQLQIDIDQRKAQALGVSIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAKYR 778

Query: 781  MLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEA 840
            MLPDDI  WYVR  DG MVPFSAF++SRWE GSPRLERYNG  ++EI+G+AAPG STG A
Sbjct: 779  MLPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTA 838

Query: 841  MELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFS 900
            M++ME L  +LP G G +WT MSYQERLSG QAP+LYAISL+VVFLCLAALYESWS+PFS
Sbjct: 839  MDVMESLVHQLPGGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFS 898

Query: 901  VMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGL 960
            VMLVVPLGVIGALLA   RGL NDVYFQVGLLT IGLSAKNAILIVEFA + M+++G  L
Sbjct: 899  VMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE-MNQKGHAL 957

Query: 961  IEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIF 1020
            ++ATL A R RLRPILMTSLAFI GV+P+  STGAGSG+Q+AVGTGVMGGM++ATVLAIF
Sbjct: 958  LDATLYASRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIF 1017

Query: 1021 FVPVFFVVVRRRFSRK 1036
            FVP+FFV++RRRF  K
Sbjct: 1018 FVPLFFVLIRRRFPLK 1033