Pairwise Alignments

Query, 1049 a.a., multidrug efflux system protein (NCBI) from Escherichia coli BW25113

Subject, 1048 a.a., multidrug efflux RND transporter permease subunit from Dickeya dadantii 3937

 Score = 1633 bits (4229), Expect = 0.0
 Identities = 823/1051 (78%), Positives = 938/1051 (89%), Gaps = 5/1051 (0%)

Query: 1    MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDT 60
            M  FFIDRPIFAWVIAI++ML G LAILKLP+AQYPTIAPPAV I+A+YPGADAKT+QDT
Sbjct: 1    MAKFFIDRPIFAWVIAIMVMLTGTLAILKLPIAQYPTIAPPAVQITANYPGADAKTLQDT 60

Query: 61   VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQ 120
            VTQVIEQNMNGID L+YMSSNSDS+GTVQITLTF++  + DIAQVQVQNKLQLAMPLLPQ
Sbjct: 61   VTQVIEQNMNGIDKLLYMSSNSDSSGTVQITLTFDADANPDIAQVQVQNKLQLAMPLLPQ 120

Query: 121  EVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVGDVQLFGS 180
            EVQQQGVSV+KSSSSFLMV+G I+ D  MTQ+DI+D+V A++KD ISR  GVGD QLFG+
Sbjct: 121  EVQQQGVSVQKSSSSFLMVLGFISDDNNMTQQDIADFVGASIKDPISRVRGVGDTQLFGA 180

Query: 181  QYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRL 240
            QYAMRIW++P++LN +QLT  DV++AI+ QN Q+AAGQLGGTPPV GQ+LNASIIAQTRL
Sbjct: 181  QYAMRIWLDPDKLNNYQLTTSDVVSAIQVQNNQIAAGQLGGTPPVPGQKLNASIIAQTRL 240

Query: 241  TSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANAL 300
             S E+FG ILLKVNQDGS+V L +VA+IELGGE+Y +IA +NG+PA+GLGIKLATGANAL
Sbjct: 241  NSPEQFGNILLKVNQDGSQVRLNNVARIELGGESYSVIARYNGRPAAGLGIKLATGANAL 300

Query: 301  DTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQ 360
            DTA+A++AE+ K++  FP+GLK+VYPYDTTPFVKISI+EVVKTL+EAI+LVF+VMYLFLQ
Sbjct: 301  DTASAVKAEITKLQSTFPAGLKVVYPYDTTPFVKISIYEVVKTLLEAIVLVFVVMYLFLQ 360

Query: 361  NFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            NFRATLIPTIAVPVVLLGTF++L+AFG+SINTLTMF MVLAIGLLVDDAIVVVENVERVM
Sbjct: 361  NFRATLIPTIAVPVVLLGTFSILSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  AEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMAL 480
            AEEGL PKEATRKSMGQIQGALVGIA+VLSAVF+PMAF GGSTGAIYRQFS+TIVS+M L
Sbjct: 421  AEEGLSPKEATRKSMGQIQGALVGIALVLSAVFIPMAFSGGSTGAIYRQFSVTIVSSMVL 480

Query: 481  SVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGR 540
            SVLVALILTPALCAT+LKPI   +HGE KKGFFGWFNR+F+KSTHHYT+SV  ILRSTGR
Sbjct: 481  SVLVALILTPALCATILKPIT--NHGE-KKGFFGWFNRLFDKSTHHYTNSVANILRSTGR 537

Query: 541  YLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLT 600
            Y+V+YLI+V G+  +F RLPSSFLP EDQGV +TMVQLP GATQE TQKVL++V  YYL 
Sbjct: 538  YVVVYLIVVAGLGLMFTRLPSSFLPQEDQGVLLTMVQLPVGATQESTQKVLDQVNDYYLQ 597

Query: 601  KEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKD 660
             EK NV+SVF VNGFGFAGRGQN GIAF SLKDW +R G  NKV+AI  RA  AFSQIK+
Sbjct: 598  HEKENVKSVFTVNGFGFAGRGQNMGIAFASLKDWDERSGAANKVDAIIGRAFGAFSQIKE 657

Query: 661  AMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNG 720
            A+V  FN+PAIVELGTA+GFDFELIDQ  LGH+KL  ARNQLL   A+HPD L  VRPNG
Sbjct: 658  ALVIPFNIPAIVELGTASGFDFELIDQNNLGHDKLMAARNQLLGMIAQHPDTLVRVRPNG 717

Query: 721  LEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYR 780
            +ED PQ++++IDQEKA++LGVSI  IN TL  A GG+YVNDFIDRGRVKKVYV +EAK+R
Sbjct: 718  MEDMPQYRLEIDQEKAESLGVSIATINATLSTALGGTYVNDFIDRGRVKKVYVQAEAKFR 777

Query: 781  MLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEA 840
            MLP+DI  WYVR   GQMVPFSAF+S RWEYGSPRLERYNGLP++E++G+AAPGKSTGEA
Sbjct: 778  MLPNDIQKWYVRGTSGQMVPFSAFASERWEYGSPRLERYNGLPAVELVGEAAPGKSTGEA 837

Query: 841  MELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFS 900
            M LME+LA++LP G+G+DWTGMSYQERL+GNQAP+L  IS IVVFLCLAALYESWSIPFS
Sbjct: 838  MALMEELAAQLPPGIGFDWTGMSYQERLAGNQAPALIIISAIVVFLCLAALYESWSIPFS 897

Query: 901  VMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGL 960
            VMLVVPLGV GA++AA  RGL NDVYF+VGLLTTIGLSAKNAILIVEFAKDLM+KEGKGL
Sbjct: 898  VMLVVPLGVFGAVMAAGLRGLENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGL 957

Query: 961  IEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIF 1020
            +EATLDAVRMRLRPILMTSLAFILGV+PLVISTGAGSGAQNAVGTGVMGGM+TATVLAI+
Sbjct: 958  VEATLDAVRMRLRPILMTSLAFILGVVPLVISTGAGSGAQNAVGTGVMGGMITATVLAIY 1017

Query: 1021 FVPVFFVVVRRRFSRKNE--DIEHSHTVDHH 1049
            FVPVFFVVVRRRF +K E  D  + HT   H
Sbjct: 1018 FVPVFFVVVRRRFGKKKEADDSHNEHTQTSH 1048