Pairwise Alignments

Query, 566 a.a., predicted transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

Subject, 553 a.a., HTH-type transcriptional regulator SgrR from Erwinia tracheiphila SCR3

 Score =  223 bits (568), Expect = 2e-62
 Identities = 176/574 (30%), Positives = 268/574 (46%), Gaps = 49/574 (8%)

Query: 9   QYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLR 68
           Q+ RLWQ   G+ Q  T+++LA R  CS RH+R+LL   Q+ GWLEW A++GR KR QL 
Sbjct: 9   QFIRLWQSCEGQSQQTTLNDLALRLNCSRRHMRSLLNAMQQQGWLEWHAEAGRSKRSQLN 68

Query: 69  FLVTPESLRNAMMEQALETGKQQDVLELAQLA--PGELRTLLQPFMGGQWQNDTPTLRIP 126
           FL T  +L+    E  LE   Q  + +L QL      +R +L   +G  ++     LRI 
Sbjct: 69  FLYTGLALQQQRAEDLLE---QDRIDQLVQLVGDKNAVRQMLVSRLGRSFRQGKHILRIL 125

Query: 127 YYRPLEPLQPGFLPGRAEQHLAGQIFSGLTRFDNNTQRPIGDLAHHWETSTDGLRWDFYL 186
           YYR L  L PG    R+E HLA QIFSGLTR +        D+AHHW+  T  L W F+L
Sbjct: 126 YYRSLLNLLPGTPLRRSETHLARQIFSGLTRINEENGEIEADIAHHWQQITP-LHWRFFL 184

Query: 187 RSTLHWHNGDAVKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHRPDYWLA 246
           R  +H+H+G  ++ + +   L  L   P    L+ ++ +I  + P  L  +LH+PD+WL 
Sbjct: 185 RPAIHFHHGRELEMADVIATLERLTSQP----LYANLHKISSSSPWSLDIYLHQPDHWLP 240

Query: 247 HRLASYCSHLAHPQFPL--------IGTGPFRLTQFTAELVRLESHDYYHLRHPLLKAVE 298
             L S  S +   ++P         IGTGP+++ +     +R+E+ D Y     L+  V 
Sbjct: 241 WLLGSVSSMILPKEWPSIANFARQPIGTGPYQVVRNQQRQLRIEAFDDYFGYRALIDEVN 300

Query: 299 YWITPPLFEKDLGTSCRHPVQITIGKPEELQRVSQVSSGISLGFCYLTL--RKSPRLSLW 356
            W+ P + E+ +  S R        K EE    S++  G     CY  L  ++S R    
Sbjct: 301 IWVLPEISEELVYASVRLQSDSLSDKSEE----SRLEEG-----CYFLLFDQRSERGRNE 351

Query: 357 QARK-VISIIHQSGLLQTLEVG-ENLITASHALLPGWTIPHWQVPDEVKLPKTLTLV--- 411
           Q R+ V S+ +   LL   ++G +     ++ LLP W   H +       P  LT +   
Sbjct: 352 QVRRWVNSLCNPVALLNQADIGYQRYWFPAYGLLPRW--HHQRDLTRSTKPAGLTSLTLT 409

Query: 412 -YHLPIELHTMAERLQATLAAEGCELTIIFHNAKNWDDTTLQAHADLMMGDRLIGEAPEY 470
            Y   IE   +A  L+  LAA G  L     +   W      A +D+ +G      +  +
Sbjct: 410 WYDDHIEYQAIANTLEPLLAAGGVTLVTRQVDYATWHRG--DAESDIWLG------SANF 461

Query: 471 TLEQWLRCDPLWPHVFDAPAYAHLQSTLDAVQIMPDEENRFNALKAVFSQLMTDATLTPL 530
           TL        L+  +++ P   H  +T     +    EN    L     +++   TL PL
Sbjct: 462 TLP---LAFSLFALLYEIPLVHHCVATNWETDVQKWRENNL-TLTEWSKRIIDSHTLHPL 517

Query: 531 FNYHYRISAPPGVNGVRLTPRGWFEFTEAWLPAP 564
           F++   +     +  V++   GWF+F  AW   P
Sbjct: 518 FHHWLLLEGIRTMRDVKMNTLGWFDFKSAWFAPP 551