Pairwise Alignments

Query, 566 a.a., predicted transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

Subject, 551 a.a., HTH-type transcriptional regulator SgrR from Escherichia fergusonii Becca

 Score =  197 bits (501), Expect = 9e-55
 Identities = 165/581 (28%), Positives = 262/581 (45%), Gaps = 65/581 (11%)

Query: 9   QYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLR 68
           Q+ RLWQ   GK Q  T++ELA    CS RH+RTLL   Q+ GWL W+A+ GRGKR +L 
Sbjct: 9   QFIRLWQCCEGKSQETTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLT 68

Query: 69  FLVTPESLRNAMMEQALETGKQQDVLELAQLA--PGELRTLLQPFMGGQWQNDTPTLRIP 126
           FL T  +L+    E  LE   Q  + +L QL      +R +L   +G  ++     LR+ 
Sbjct: 69  FLYTGLALQQQRAEDLLE---QDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVL 125

Query: 127 YYRPLEPLQPGFLPGRAEQHLAGQIFSGLTRFDNNTQRPIGDLAHHWETSTDGLRWDFYL 186
           YYRPL  L PG    R+E H+A QIFS LTR +        D+AHHW+     L W F+L
Sbjct: 126 YYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQ-QISPLHWRFFL 184

Query: 187 RSTLHWHNGDAVKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHRPDYWLA 246
           R  +H+H+G  ++   +   L  +  LP    L+  +  I    P  L   L +PD WL 
Sbjct: 185 RPGVHFHHGRELEMDDVISSLKRINTLP----LYSHIADIVSPTPWTLDIHLTQPDRWLP 240

Query: 247 HRLA------------SYCSHLAHPQFPLIGTGPFRLTQFTAELVRLESHDYYHLRHPLL 294
             L             +  +  +HP    IGTGP+ + + +   +++++ D +     L+
Sbjct: 241 LLLGQVPAMILPREWETLSNFASHP----IGTGPYAVIRNSTNQLKIQAFDDFFGYRALI 296

Query: 295 KAVEYWITPPLFEKDLGTSCRHPVQITIGKPEELQRVSQVSSGISLGFCYLTL--RKSPR 352
             V  W+ P + ++  G      + +   + EE +  S++  G     CY  L   ++ R
Sbjct: 297 DEVNVWVLPEIADEPAG-----GLMLKGPQGEEKEIESRLEEG-----CYYLLFDSRTHR 346

Query: 353 LSLWQARKVIS-IIHQSGLLQTLEVG-ENLITASHALLPGWTIPHWQVPDEVKLP---KT 407
            +  Q R  +S ++  + L+   E   + L   ++ LLP W   H   P   + P   + 
Sbjct: 347 GANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRW---HHARPTHCEKPAGLEN 403

Query: 408 LTLVYHLP-IELHTMAERLQATLAAEGCELTIIFHNAKNWDDTTLQAHADLMMGDRLIGE 466
           LTL ++   IE   +A  +Q  LA+    L I   +   W +  +++   L         
Sbjct: 404 LTLTFYQDHIEHRVIAGIMQQILASHQVTLKIKEISYDQWHEGEIESDIWL--------N 455

Query: 467 APEYTLEQWLRCDPLWPHVFDAPAYAH---LQSTLDAVQIMPDEENRFNALKAVFSQLMT 523
           +  +TL        L+ H+ + P   H   +    DA +    E N  N  +    QL+ 
Sbjct: 456 SANFTLPLDF---SLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQ----QLVA 508

Query: 524 DATLTPLFNYHYRISAPPGVNGVRLTPRGWFEFTEAWLPAP 564
              + PL ++   I     + G+R+   GWF+F  AW   P
Sbjct: 509 SKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPP 549