Pairwise Alignments

Query, 400 a.a., exonuclease, dsDNA, ATP-dependent (NCBI) from Escherichia coli BW25113

Subject, 413 a.a., exonuclease SbcD from Pseudomonas simiae WCS417

 Score =  179 bits (453), Expect = 2e-49
 Identities = 131/400 (32%), Positives = 201/400 (50%), Gaps = 51/400 (12%)

Query: 1   MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYAR 60
           MR+ HTSDWHLGQN + + R+ EH  FL+WLL   +TH  D +++AGD+FDT +PP  A+
Sbjct: 1   MRLFHTSDWHLGQNLHGQERDFEHACFLEWLLGQLKTHLPDVLLIAGDIFDTVNPPLKAQ 60

Query: 61  TLYNRFVVNL--QQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVA----------SA 108
                F+++   Q     +V++AGNHDS + +     +M  L T  +            A
Sbjct: 61  ERLYDFIISAHEQNPKLTIVMIAGNHDSGSRIELPAPLMRRLRTHALGRVLWLDDGQLDA 120

Query: 109 GHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAG---LNGI-EKQQHLLAAITDYYQQH 164
                 LP   G   A    +PFLRP ++  +  G   L GI +  + L+AA        
Sbjct: 121 ERLLIPLPDAKGKIAAWCLALPFLRPAEVTGAHLGDDYLRGIGQVHEWLIAA-------- 172

Query: 165 YADACKLRGDQPLPIIATGHLTTVGASKS-DAVRDIYIGTLDAFPAQNFP-PADYIALGH 222
            A+A + +G     +IA  H    G S S D+ R + IG  +A PA  F     Y+ALGH
Sbjct: 173 -ANAKRKKGQ---ALIAISHAHMAGGSVSEDSERSLIIGNAEALPASLFDRSVAYVALGH 228

Query: 223 IHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVL 282
           +H+ Q + G E +RY GSPIPLSF E G    +  VTF    L SVE L +P +  +  L
Sbjct: 229 LHKPQKVNGEERIRYSGSPIPLSFSEIGYKHQILDVTFQGQCLVSVEPLLIPRSVDLQRL 288

Query: 283 K-GDLASITAQLEQWRDV-----SQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVL 336
           +   LA I   L +  D+     +Q  P WL++ +  DE   D++++I++  +   V ++
Sbjct: 289 EAAPLADILKALAELPDIDLLAETQRHP-WLEVRVRLDEPQPDLRQQIESALQGKAVRLV 347

Query: 337 LV--------RRSREQRERVLASQQRETLSELSVEEVFNR 368
            +         R  E  +R++       L +L+ +E+F+R
Sbjct: 348 RIAAEYAGTGSREDEGDDRLI------DLDQLTPQELFSR 381