Pairwise Alignments

Query, 400 a.a., exonuclease, dsDNA, ATP-dependent (NCBI) from Escherichia coli BW25113

Subject, 412 a.a., Exonuclease SbcD from Pseudomonas putida KT2440

 Score =  177 bits (450), Expect = 4e-49
 Identities = 131/393 (33%), Positives = 194/393 (49%), Gaps = 38/393 (9%)

Query: 1   MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYAR 60
           MR+ HTSDWHLGQ+ + + R+ EH  FLDWLL   +  Q DA+++AGD+FDT +PP  A+
Sbjct: 1   MRLFHTSDWHLGQSLHGQERDFEHACFLDWLLGQLRLRQPDALLIAGDIFDTVNPPVKAQ 60

Query: 61  TLYNRFVVNL--QQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQ----- 113
                F+V    QQ    +V++AGNHDS + +     +M  L T  +       +     
Sbjct: 61  ERLYDFIVQAHEQQPKLDIVMIAGNHDSGSRIELPAALMRRLRTHALGRVHWLDEGQLDA 120

Query: 114 ---ILPRRD--GTPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADA 168
              ++P  +  G   A    +PFLRP ++   Q G          L  IT  +QQ  A A
Sbjct: 121 ERLLIPLTNGRGKVAAWCLALPFLRPAEVTGPQLG-------DDYLQGITQVHQQLIAAA 173

Query: 169 CKLR-GDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPA-DYIALGHIHRA 226
            K R  DQ L  I+  H+   GA   D+ R + IG  +A PA+ F  A  Y+ALGH+H+ 
Sbjct: 174 LKKRKKDQALIAISHAHMAG-GAVSEDSERSLIIGNAEALPAKLFDKAISYVALGHLHKP 232

Query: 227 QIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVT--------QP 278
           Q +   E +RY GSPIPLSF E      V  V      L SVE   VP           P
Sbjct: 233 QKVNREERIRYSGSPIPLSFAEINYPHQVLEVELDGNGLVSVEPRPVPRAVALQRVGPAP 292

Query: 279 MAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLV 338
           +  L   LA +   ++   D +++P  WL++ +  DE   D++++I+   E   V   L+
Sbjct: 293 LGELLQQLADLPV-VDLLEDPNRQP--WLEVRVLLDEPQPDLRQQIETALEGKAVR--LI 347

Query: 339 RRSREQRERVLASQQR---ETLSELSVEEVFNR 368
           R S E   R  A         L++++ +++F+R
Sbjct: 348 RISAEYAGRNNAEDDDLAFVELAQMTPQDLFSR 380