Pairwise Alignments

Query, 385 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

Subject, 377 a.a., helix-turn-helix domain-containing protein from Serratia liquefaciens MT49

 Score =  266 bits (680), Expect = 7e-76
 Identities = 151/369 (40%), Positives = 212/369 (57%), Gaps = 8/369 (2%)

Query: 11  AQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRVVDIDDAVARH 70
           A+ IV R M II  ++NVMD+ G II SG+  R+ + HEGA+L L++ RVV+ID   A H
Sbjct: 13  ARQIVQRAMSIISHSVNVMDSNGVIIASGNPSRLFQRHEGAVLALTENRVVEIDAVTAAH 72

Query: 71  LHGVRQGINLPLRLEGEIVGVIGLTGEPENLRKYGELVCMTAEMMLEQSRLMHLLAQDSR 130
           L GVR GINLP     + VGVIG++GEP  +R Y ELV M AEMM+EQ+ L+     + R
Sbjct: 73  LKGVRPGINLPFSFHSQQVGVIGISGEPAQVRAYAELVKMAAEMMVEQAALLDQHQWEKR 132

Query: 131 LREELVMNLIQAEENTPALTEWAQRLGIDLNQPRVVAIVEVDSGQLGVDSAMAELQQLQN 190
            REEL   L+Q +  + +L   A  LG+DL QPR+V I E+       D+    L++L  
Sbjct: 133 YREELANQLLQPQPASGSLEAMAAYLGLDLQQPRIVWIAELQ------DTQPHLLRELLT 186

Query: 191 ALTTPERNNLVAIVSLTEMVVLKPALNSFGRWDAEDHRKRVEQLITRMKEYGQLRFRVSL 250
            L   +R  L+AI    EM++L+PA    G W+ +  RK+ +QL ++++   +   R+ +
Sbjct: 187 ELEQTQREALIAITGFNEMILLRPASLVQGEWNVKQERKQAQQLQSQLQ--SRFNLRLIV 244

Query: 251 GNYFTGPGSIARSYRTAKTTMVVGKQRMPESRCYFYQDLMLPVLLDSLRGDWQANELARP 310
           G +F+G   + RS  TA+ T  + K+     +  FYQD  LP LL  L  DW+A EL+RP
Sbjct: 245 GGFFSGEAGLHRSSLTARATQAMAKRLKLRHKTLFYQDYPLPSLLCDLGEDWRAQELSRP 304

Query: 311 LARLKTMDNNGLLRRTLAAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFD 370
              L   D  G+LR TL  +F  N     T+  L IH NTL YRL RI  +T L +    
Sbjct: 305 WQVLGEQDEKGVLRSTLRHYFSRNCDQTQTAAELHIHVNTLRYRLQRIEAITELKINQLT 364

Query: 371 DRLLLYVAL 379
           D L LY+ +
Sbjct: 365 DALQLYIGM 373