Pairwise Alignments

Query, 183 a.a., N-acetyl-anhydromuranmyl-L-alanine amidase (NCBI) from Escherichia coli BW25113

Subject, 186 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Pseudomonas sp. RS175

 Score =  199 bits (506), Expect = 2e-56
 Identities = 98/176 (55%), Positives = 122/176 (69%), Gaps = 2/176 (1%)

Query: 6   GWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFGGPWIDALFTGTIDPQAHPFFA 65
           GW  G R  PSP+++ RP+ E  +LLV+HNISLPP +F    +   F   +D   HP+FA
Sbjct: 8   GWCHGVRHCPSPNFNARPEGEI-SLLVIHNISLPPAQFATGKVQEFFQNRLDVTEHPYFA 66

Query: 66  EIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQYQGRERCNDFSIGIELEGTDTLAY 125
            IA LRVSAH LI RDG + Q+V   +RAWHAGVS ++GRE CNDFSIGIELEGTD L +
Sbjct: 67  GIADLRVSAHFLIERDGAVTQFVSCLERAWHAGVSCFEGRETCNDFSIGIELEGTDDLPF 126

Query: 126 TDAQYQQLAAVTRALIDCYPDI-AKNMTGHCDIAPDRKTDPGPAFDWARFRVLVSK 180
           TDAQY  L  +TR L   +  I  + + GH DIAP RKTDPGPAFDWAR+R  +++
Sbjct: 127 TDAQYAALVDLTRQLQAAFSSITVERICGHSDIAPGRKTDPGPAFDWARYRAALTE 182