Pairwise Alignments

Query, 947 a.a., Signal transduction histidine kinase from Kangiella aquimarina DSM 16071

Subject, 918 a.a., BarA sensory histidine kinase (= VarS = GacS) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  557 bits (1435), Expect = e-162
 Identities = 344/947 (36%), Positives = 538/947 (56%), Gaps = 37/947 (3%)

Query: 1   MKDWGISKRIMTLALTPTILVALLLGTLFISNHINDSKYSLTARGKTIATHLALASEYGL 60
           M ++ +  R+M L L PT+L+ LLL   F+ +  ND +  L   G +I   LA++SEYG+
Sbjct: 1   MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGM 60

Query: 61  ITLDEKNLAEMAQAARDNDKDLM-AVAIFDQNNRVLASVGSAETLSVMSIDN--PYSLAR 117
              + +++ ++         D++ A++++D +NR+  +       S M +    P+    
Sbjct: 61  NLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRL 120

Query: 118 SGSSNNLMRFARTAESEQGKLFYAPIISKFPETYESWQNYSQANAQLLGYVAVMMTDEFS 177
           S   +  +   RT           PIIS+     ES    ++    +LGYVA+ +  +  
Sbjct: 121 SVDRHGDIMILRT-----------PIISESYSPDESAIADAKNTKNMLGYVALELDLKSV 169

Query: 178 AISRYNTILTTLFITLIGLLIGGFLARRMSMSVTTPIEKMVEGINRIKDGRLDTRIESEA 237
            + +Y  I  +  + L  + I      R+   VT PI  MV  ++RI+ G+LD+R+E   
Sbjct: 170 RLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFM 229

Query: 238 NAELLTLQEGINLMAENMEHNQDEMQLAVDQATEDLRETLETLEVNNLELDIARRQALEA 297
             EL  L+ GIN MA ++    +EMQ  +DQAT DLRETLE +E+ N+ELD+A+++A EA
Sbjct: 230 LGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEA 289

Query: 298 SRVKTEFLANMSHEIRTPMNGVIGFTELLLKTELNNKQKDFLFDIKRSATSLLSIIDDIL 357
           +R+K+EFLANMSHE+RTP+NGVIGFT L LKTELN  Q+D L  I+RSA +LL+II+D+L
Sbjct: 290 ARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVL 349

Query: 358 DYSKIEAGKMSFERYPFDLRECVDDIFRMLGPNANKKGIELVSLIYSDVPKALLGDPIRI 417
           D+SK+EAGK+  E  PF LR  +D++  +L  +++ KG+EL   I +DVP  ++GDP+R+
Sbjct: 350 DFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRL 409

Query: 418 KQIITNLVNNAIKFTKSGSVELYAEVESENKKGLKLKIQVKDSGIGLTQEQQRNLFKAFS 477
           +Q+ITNLV NAIKFT+SG++++  E  + +   +++++Q++D+GIG+ +  Q  LF+AF 
Sbjct: 410 QQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFR 469

Query: 478 QADSSTKREFGGTGLGLVISKSLVEKMGGNIGVNSNQGEGSTFWFTLQCERTDALPEDGL 537
           QAD+S  R  GGTGLGLVI++ LV +MGG+I  +S    GSTFWF +  +    +  DG 
Sbjct: 470 QADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGP 529

Query: 538 TGEFLANKSVLVFDPHPSTRLSITQILEEWGMLV---RSFEKIDDLMTEIDLYSQSGKSI 594
           +   LA K +   +P+ +       +L +  + V    +F  +     +I + S      
Sbjct: 530 STACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFR 589

Query: 595 ELIIIGGQRFRRRQQQLEYICNKAQTQLYCPIITFTTAGNADFLEHLHSIGVNRAMTKPV 654
           E + +  +R  +     +++       L  P      A      E L   G    + KP+
Sbjct: 590 EPLTMQHERLAKAASMTDFLL------LALPCHAQINA------EKLKQGGAAACLLKPL 637

Query: 655 THRALYNSLIELLKTPSIHSGKEPAEAPVGDASLLKDIYVLAVDDNPANLRLVTTLLQDL 714
           T   L  +L E  +   ++   EP    + D S +  + V+AVDDNPANL+L+  LL+D 
Sbjct: 638 TSTRLLPALTEYCQ---LNHHPEPL---LMDTSKI-TMTVMAVDDNPANLKLIGALLEDK 690

Query: 715 NIKVDAAESGMQAVSLSKNKVYDAILMDIQMPEMDGLEATRTIRANRTNLNTPIIALTAH 774
              V+  +SG QAV  +K   +D ILMDIQMP+MDG+ A   I        TP+IA+TAH
Sbjct: 691 VQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAH 750

Query: 775 AMASEREQLLEAGMDDYMTKPVSEQALVNLLLKWTQAASDINPTPTVQQEIEDENRNQSL 834
           AMA ++E+LL AGM+DY+ KP+ E+ L NLLL++   A+        +      N N +L
Sbjct: 751 AMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATL 810

Query: 835 DWSLSLKLANNNEQLAIDMLKMLVDSNFDTGRNIHAAYQSQDFDQLLQHVHKLHGASCYV 894
           DW L+L+ A     LA DML+ML+D   +    I      ++ + L+  VHKLHG+  Y 
Sbjct: 811 DWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYS 870

Query: 895 GTPKLKHLSNVYETLLKKQQY-NKLEELHEQLLAELEVVNKEAERFL 940
           G P++K+L  + E  L+   +  +LE    +LL E++ V +EA++ L
Sbjct: 871 GVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKIL 917