Pairwise Alignments

Query, 490 a.a., RNA polymerase, sigma 54 subunit, RpoN/SigL from Kangiella aquimarina DSM 16071

Subject, 477 a.a., RNA polymerase sigma-54 factor RpoN from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  344 bits (882), Expect = 4e-99
 Identities = 196/492 (39%), Positives = 302/492 (61%), Gaps = 25/492 (5%)

Query: 1   MNPTLQLNLSQQLKLSPQLQQSIKLLQLSHLALQQEIQYQLETNPLLNLVDGSYFEVSDQ 60
           M   LQL LSQQL ++PQLQQ+I+LLQLS L LQQE+Q  LE NPLL   D     + D+
Sbjct: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALENNPLLEQTD-----LHDE 55

Query: 61  DDSQADNHQKSSP-DSASDNRDSNLSSQMLSQAYFDLDQSSYSHGSTT-ISDNYFENLM- 117
            D+Q    Q + P D+A       +  ++   A +D     Y+ G+ +  S +Y ++ + 
Sbjct: 56  IDTQQP--QDNDPLDTADALEQKEMPEELPLDASWD---EIYTAGTPSGPSGDYIDDELP 110

Query: 118 ----QDSVGLREHLEWQIQMSSLSRGDMEIAYYVIENIDDAGFLTVTPEEIAKQIQEDFM 173
               + +  L+++L WQ++++  S  D  IA  +++ +DD G+LTV+ +EI + + +   
Sbjct: 111 VYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVSLDEIRESMGDV-- 168

Query: 174 HDVEADEIVAVIHQVQQLEPLGCASKDLQEFLIVQLNSMNREAASQQKKSISLAIKLVTH 233
            +V+ DE+ AV+ ++Q+ +P+G A+KDL++ L++QL+  ++     ++  +     ++  
Sbjct: 169 -EVDLDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKSTPWLEEARL-----IICD 222

Query: 234 HFNALQKHQYQDLRHRLSLTELELNDSLSLIKHLRTQPNYQFIGESTEYIKPDVLVYKLG 293
           H + L  H ++ L     L E  L ++++LI+ L  +P         EY+ PDVLV K  
Sbjct: 223 HLDLLANHDFRTLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHN 282

Query: 294 NEWQAQLAGHSTPHLDINHQYADFLRKSRNPNDHQYLRDRLQKARWFMQSIEARNDTLKR 353
             W  +L   S P L IN  YA     +RN  D Q++R  LQ A+W ++S+E+RNDTL R
Sbjct: 283 GRWTVELNSDSIPRLQINQHYAAMCNSARNDADSQFIRSNLQDAKWLIKSLESRNDTLLR 342

Query: 354 VADWIVRYQQNFFDNGESSIRPMRLKDLAQDLDLHESTISRACSDKYLQSPRGIYELKYF 413
           V+  IV  QQ FF+ GE  ++PM L D+AQ +++HESTISR  + KYL SPRGI+ELKYF
Sbjct: 343 VSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYF 402

Query: 414 FSNAIPSTQGGEWSSKAIKNKIKQYVNAEPSRKPLSDIKLAELLNQEGVSIARRTVAKYR 473
           FS+ + +  GGE SS AI+  +K+ + AE   KPLSD KL  LL+++G+ +ARRTVAKYR
Sbjct: 403 FSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYR 462

Query: 474 EALNIPPACQRK 485
           E+L+IPP+ QRK
Sbjct: 463 ESLSIPPSNQRK 474