Pairwise Alignments

Query, 490 a.a., RNA polymerase, sigma 54 subunit, RpoN/SigL from Kangiella aquimarina DSM 16071

Subject, 477 a.a., RNA polymerase, sigma 54 (sigma N) factor from Escherichia coli BL21

 Score =  347 bits (889), Expect = e-100
 Identities = 190/490 (38%), Positives = 299/490 (61%), Gaps = 21/490 (4%)

Query: 1   MNPTLQLNLSQQLKLSPQLQQSIKLLQLSHLALQQEIQYQLETNPLLNLVDGSYFEVSDQ 60
           M   LQL LSQQL ++PQLQQ+I+LLQLS L LQQE+Q  LE+NPLL  +D      + +
Sbjct: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQID------THE 54

Query: 61  DDSQADNHQKSSPDSASDNRDSNLSSQMLSQAYFDLDQSSYSHGSTTISDNYFENLMQDS 120
           +    +     + D+A       +  ++   A +D   ++ +   T  S +Y ++ +   
Sbjct: 55  EIDTRETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGT--SGDYIDDELPVY 112

Query: 121 VG-----LREHLEWQIQMSSLSRGDMEIAYYVIENIDDAGFLTVTPEEIAKQIQEDFMHD 175
            G     L+++L WQ++++  S  D  IA  +++ +DD G+LTV  E+I + + ++   +
Sbjct: 113 QGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLEDILESMGDE---E 169

Query: 176 VEADEIVAVIHQVQQLEPLGCASKDLQEFLIVQLNSMNREAASQQKKSISLAIKLVTHHF 235
           ++ DE+ AV+ ++Q+ +P+G A+KDL++ L++QL+  ++     ++  +     +++ H 
Sbjct: 170 IDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARL-----IISDHL 224

Query: 236 NALQKHQYQDLRHRLSLTELELNDSLSLIKHLRTQPNYQFIGESTEYIKPDVLVYKLGNE 295
           + L  H ++ L     L E  L ++++LI+ L  +P         EY+ PDVLV K    
Sbjct: 225 DLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGH 284

Query: 296 WQAQLAGHSTPHLDINHQYADFLRKSRNPNDHQYLRDRLQKARWFMQSIEARNDTLKRVA 355
           W  +L   S P L IN  YA     +RN  D Q++R  LQ A+W ++S+E+RNDTL RV+
Sbjct: 285 WTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVS 344

Query: 356 DWIVRYQQNFFDNGESSIRPMRLKDLAQDLDLHESTISRACSDKYLQSPRGIYELKYFFS 415
             IV  QQ FF+ GE  ++PM L D+AQ +++HESTISR  + KYL SPRGI+ELKYFFS
Sbjct: 345 RCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFS 404

Query: 416 NAIPSTQGGEWSSKAIKNKIKQYVNAEPSRKPLSDIKLAELLNQEGVSIARRTVAKYREA 475
           + + +  GGE SS AI+  +K+ + AE   KPLSD KL  LL+++G+ +ARRTVAKYRE+
Sbjct: 405 SHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRES 464

Query: 476 LNIPPACQRK 485
           L+IPP+ QRK
Sbjct: 465 LSIPPSNQRK 474