Pairwise Alignments

Query, 726 a.a., Superfamily I DNA and RNA helicases from Kangiella aquimarina DSM 16071

Subject, 824 a.a., DNA helicase II from Agrobacterium fabrum C58

 Score =  470 bits (1210), Expect = e-136
 Identities = 275/654 (42%), Positives = 387/654 (59%), Gaps = 33/654 (5%)

Query: 3   ASSIIQPLNDAQKEAVTAPNKALLVLAGAGSGKTRVLVHRIAWLVQVERVSAHSILAVTF 62
           A   +  LN  Q+EAV   +  +LVLAGAG+GKTRVL  RIA ++   R     ILAVTF
Sbjct: 49  AHDYLSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTF 108

Query: 63  TNKAAKEMLGRVEDMLAMPARGM-WIGTFHSIAHRLLRAHYRDAGLPEGFQILDAQDQLR 121
           TNKAA+EM  R+  ++     GM W+GTFHSI  +LLR H    GL   F ILD  D +R
Sbjct: 109 TNKAAREMKERIGVLVGGAVEGMPWLGTFHSIGVKLLRRHAELIGLKSDFTILDTDDVVR 168

Query: 122 VIKRVMKELNLDDNEWPPKQAQWFINAKKDDGLRPGDIHHHGD---FFVSTMVKVYYAYE 178
           +IK++++   LDD  WP KQ    I+  K+ GL P DI   GD   F      ++Y AY+
Sbjct: 169 LIKQLIQAEGLDDKRWPAKQFAGMIDGWKNKGLTPPDIPE-GDSRAFANGKGRELYAAYQ 227

Query: 179 EACKRGGLVDFNELLLRAYELWANNPHLLKHYQDRFQHILVDEFQDTNAIQYAWIRLLC- 237
              K     DF +LLL    ++  +  +LK Y  +F++ILVDE+QDTN  QY W+RLL  
Sbjct: 228 ARLKTLNACDFGDLLLHPISIFRRHTDILKEYHQKFRYILVDEYQDTNTAQYMWLRLLAQ 287

Query: 238 ---NDNNRITIVGDDDQSIYGWRGARIENIQQFEKDFPDCKVSRLEQNYRSTSTILKAAN 294
              ++   +  VGDDDQSIYGWRGA ++NI +F+KDFP  KV +LE+NYRST  IL AA 
Sbjct: 288 RAKDEPQNVCCVGDDDQSIYGWRGAEVDNILRFDKDFPGAKVIKLERNYRSTEHILGAAG 347

Query: 295 AVIANNQDRMGKSLWTEGNQ--GEPIILYSAFNEQEEARFIAARIEDWVQQGNSYDDIAI 352
            +IA+N+ R+GK+L+TE +    E +++++A++ +EEAR +   IE   ++    +D+AI
Sbjct: 348 HLIAHNEGRLGKTLFTERSSPDDEKVVVHAAWDSEEEARAVGEEIEQLQRKNYKLNDMAI 407

Query: 353 LYRSNAQSRILEDAMLQKGIPYRIYGGLRFFERAEIKDTLAYMRLMANRDDDTSFERVVN 412
           L R++ Q R  ED  +  G+ YR+ GG RF+ER EI+D +AY RL+    DD +FER+VN
Sbjct: 408 LVRASFQMREFEDRFVTLGLNYRVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVN 467

Query: 413 QPARGLGEKSVDMIRMQARQDETSLWQAASKMVVEQLLPPRAKNALGGFLHLINELETST 472
            P RGLG+ ++  +   AR  +  +  AA+ ++    L P+A+ AL     ++ +     
Sbjct: 468 TPKRGLGDTTIRNLHDYARARDIPMLAAAADIIETDELKPKARKAL---FDVVQDFRRWQ 524

Query: 473 AELDLWEQTDI---VIEHSGLLDMYSKEKGEKGQARKENLQELVNATREFDPDEAIPDET 529
             L+  E T +   +++ SG   M+  +K  +   R ENL+EL+ +   F+         
Sbjct: 525 GLLENTEHTTLAEQILDESGYTAMWQADKTAEAPGRLENLKELIRSMESFE--------- 575

Query: 530 PDMTPLQAFIAHATLEAGETQADEYQESVQMMTLHSAKGLEFPLVFIAGVEEKLFPHQMS 589
                ++ F+ H  L     Q  E  ++V +MTLHSAKGLEF  VF+ G EE LFPHQ +
Sbjct: 576 ----SMRGFLEHVALVMDAEQNAEL-DAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRA 630

Query: 590 LDEPG--GLEEERRLAYVGITRAMKQLYLTFAEKRRIFGRETYPQQSRFIREIP 641
           LDE G  GLEEERRLAYVGITRA K  ++ F   RRI G       SRF+ E+P
Sbjct: 631 LDEGGRSGLEEERRLAYVGITRAKKLCHIWFVSNRRIHGLWQSTLPSRFLDELP 684



 Score = 32.3 bits (72), Expect = 1e-04
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 672 PEGFYLGQLVKHPKFGKGIIINYEGEGPQASVQINFEKEGLKKLM 716
           P  F++G  V H KFG G I   EG      + INF++ G K+++
Sbjct: 777 PSKFFVGDRVFHLKFGNGNISAIEGN----KLTINFDRAGEKRVL 817