Pairwise Alignments

Query, 941 a.a., excinuclease ABC subunit UvrA from Erwinia tracheiphila SCR3

Subject, 974 a.a., excinuclease ABC subunit UvrA from Rhizobium sp. OAE497

 Score = 1129 bits (2921), Expect = 0.0
 Identities = 577/960 (60%), Positives = 731/960 (76%), Gaps = 26/960 (2%)

Query: 4   IEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I +RGAR HNLK I+L +PR+KLIV+TGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 7   ISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 66

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPEH 123
           FL +M+KPDVD I+GLSPAISIEQK+TS NPRSTVGT+TEI+DY+RLLFARVG P  P  
Sbjct: 67  FLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYSPAT 126

Query: 124 DVTLAAQTVSQMVDNVLALTEGRRLMLLAPIIKERKGEHSKTLENLASQGYIRARIDGEV 183
            + + +QTVSQMVD VLA  EG RL +LAP+++ RKGE+ K L  L  +G+ R ++DG+ 
Sbjct: 127 GLPIESQTVSQMVDRVLAFEEGTRLYILAPLVRGRKGEYKKELAELMKKGFQRVKVDGQF 186

Query: 184 CDLSDPPKLELQKKHTIEVVVDRFKVRDDLQQRLAESFETALELSGGTVVVADMD----- 238
            +++D P L+ + KH I+VVVDR  VR D+  RLA+S ET+L+L+ G  V    D     
Sbjct: 187 YEIADVPALDKKYKHDIDVVVDRIVVRADMSSRLADSLETSLKLADGLAVAEFADKPLPP 246

Query: 239 -DTSA------------EELVFSANFACPVCGYSMSELEPRLFSFNNPAGACATCDGLGV 285
            +T+A            E ++FS  FACPV G+++ E+EPRLFSFNNPAGAC TCDGLG 
Sbjct: 247 EETAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPAGACPTCDGLGA 306

Query: 286 QQYFDPERVVQNPDLSLAGGAIRGWDRRNF-YYFQMLCSLSEHLNFDIETPFISLDASTR 344
           QQ  D   ++  P+ +L  GAI  W + +  YY Q L +L +H  F +   +  L A  +
Sbjct: 307 QQKIDANLIIPEPERTLRDGAIAPWAKSSSPYYNQTLEALGKHFGFKLGNRWSDLSAKAQ 366

Query: 345 KVILYGSGKENIEFKYINDRGDTSVRRHP-FEGVLHNMERRYKETESAAVREDLAKFISN 403
            VIL G+ +E IEF Y +  G  S   H  FEG++ N+ERR+KET+SA  RE++ +F+S 
Sbjct: 367 DVILNGT-EEKIEFHYAD--GARSYTTHKTFEGIITNLERRWKETDSAWAREEIERFMSA 423

Query: 404 RACASCEGTRLRREARHVFVENTNLPTISDMSIGHAMTFFQEMK--LSGQRAKIAEKVLK 461
             C SC G RL+ EA  V ++  ++  ++ MSI  A  +F+ +    + ++ +IA ++LK
Sbjct: 424 APCPSCAGYRLKPEALAVKIDKLHIGEVTQMSIRVARDWFEVLPSHFTAKQNEIAVRILK 483

Query: 462 EIGDRLKFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQ 521
           EI DRL+FL +VGL YLSLSR++ TLSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQ
Sbjct: 484 EIRDRLRFLNDVGLEYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQ 543

Query: 522 RDNERLLETLVHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVRGGQVVAEGTVDDIM 581
           RDN RLL+TL HLR++GNTVIVVEHDEDAI  AD V+DIGP AG+ GGQV+A GT  DIM
Sbjct: 544 RDNARLLDTLKHLRDIGNTVIVVEHDEDAILTADDVVDIGPAAGIHGGQVIAHGTPQDIM 603

Query: 582 AVDASLTGQFLSGKRSIAVPQERVKAAPNKVLKLTGAKGNNLKDVTLTLPVGLFSCITGV 641
           A   SLTG++LSG+  + VP ER K    K +K+ GA+GNNLK+VT ++P+G+F+ +TGV
Sbjct: 604 ANPKSLTGKYLSGELGVPVPDERRKPKKGKEIKVVGARGNNLKNVTASIPLGVFTAVTGV 663

Query: 642 SGSGKSTLINDTLFPIAQRLLNGATIIEPAPYRDISGMEHFDKVIDIDQSPIGRTPRSNP 701
           SG GKST + +TL+  A R + GA  I PA +  I G EH DKVIDIDQSPIGRTPRSNP
Sbjct: 664 SGGGKSTFLIETLYKSAARRVMGAREI-PADHDRIDGFEHIDKVIDIDQSPIGRTPRSNP 722

Query: 702 ATYTGIFTPVRELFSGVPESRTRGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYV 761
           ATYTG FTP+R+ F+G+PE++ RGY PGRFSFNV+GGRCEACQGDGVIK+EMHFLPD+YV
Sbjct: 723 ATYTGAFTPIRDWFAGLPEAKARGYQPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYV 782

Query: 762 PCDQCKGKRYNRETLEIKYKGKSIHEVLEMTIEEAREFFDAVPALARKLQTMMDVGLSYI 821
            CD C GKRYNRETL++ +KGKSI +VL+MT+EE  EFF AVPA+  KLQ++ DVGL YI
Sbjct: 783 TCDVCHGKRYNRETLDVTFKGKSISDVLDMTVEEGVEFFAAVPAVRDKLQSLFDVGLGYI 842

Query: 822 RLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLEVLHQLRDQ 881
           ++GQ A TLSGGEAQRVKLA+ELSKR TG+TLYILDEPTTGLHF D+ +LLE+LH+L +Q
Sbjct: 843 KVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDVAKLLEMLHELVNQ 902

Query: 882 GNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILASGTPETVAKCKASHTARFLKPLLK 941
           GN++VVIEHNL+VIKTADW++D GPEGG GGGEI+A+GTPE + K K S+T +FLK LL+
Sbjct: 903 GNSVVVIEHNLEVIKTADWVLDFGPEGGDGGGEIVATGTPEAIVKEKRSYTGQFLKELLE 962



 Score = 63.5 bits (153), Expect = 6e-14
 Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 8/123 (6%)

Query: 611 KVLKLTGAKGNNLKDVTLTLPVGLFSCITGVSGSGKSTLINDTLFPIAQR------LLNG 664
           K + + GA+ +NLK + L LP      +TG+SGSGKS+L  DT++   QR          
Sbjct: 5   KTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYA 64

Query: 665 ATIIEPAPYRDISGMEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPVRELFS--GVPESR 722
              +E     D+  ++     I I+Q    R PRS   T T I+  +R LF+  GVP S 
Sbjct: 65  RQFLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYSP 124

Query: 723 TRG 725
             G
Sbjct: 125 ATG 127



 Score = 60.1 bits (144), Expect = 7e-13
 Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 3   KIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
           +I+V GAR +NLKN+   IP      VTG+SG GKS+   +TLY    RR + +    A 
Sbjct: 634 EIKVVGARGNNLKNVTASIPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPA- 692

Query: 63  QFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPR 119
                 +   +D  E +   I I+Q      PRS   T T     +R  FA + E +
Sbjct: 693 ------DHDRIDGFEHIDKVIDIDQSPIGRTPRSNPATYTGAFTPIRDWFAGLPEAK 743