Pairwise Alignments

Query, 285 a.a., HTH-type transcriptional activator RhaR from Erwinia tracheiphila SCR3

Subject, 282 a.a., DNA-binding transcriptional activator, L-rhamnose-binding (RefSeq) from Escherichia coli BW25113

 Score =  268 bits (686), Expect = 8e-77
 Identities = 140/271 (51%), Positives = 177/271 (65%), Gaps = 5/271 (1%)

Query: 5   LRLVKADYFPSDLMPVVVVDRSPQPSFPLHNHEFNELVIVWRGNGLHVMNDKPWLITCGD 64
           L+L+K D+F SD   V V DR PQ  F  H H+F ELVIVWRGNGLHV+ND+P+ IT GD
Sbjct: 5   LKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRPYRITRGD 64

Query: 65  LFYIGTDDCHSYESVHDLVLDNIIYCPERFQLGVDLRHFFP-----YEQVAWRLTIRGMS 119
           LFYI  DD HSY SV+DLVL NIIYCPER +L +D +   P       Q  WRL   GM+
Sbjct: 65  LFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFNASAGQPHWRLGSMGMA 124

Query: 120 LVRGVILQLSQEGHKSDQLSRQLAETLFLQLLLILQRHRYRADCAWQLPEGEQLDLLMSA 179
             R VI QL  E  +    + ++AE LF QL+++L RHRY +D          LD L++ 
Sbjct: 125 QARQVIGQLEHESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETLLDKLITR 184

Query: 180 IGGQISHHFDLSMFCETHQLSERALKQLFRQQTGMMPAQYLRQLRLCKAKFLLRSTTCLI 239
           +   +   F L  FC+    SER L+Q FRQQTGM   QYLRQ+R+C A++LL+ +  LI
Sbjct: 185 LAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLLI 244

Query: 240 GEVAARCGFDDSNYFSVVFTRETGMTPSAFR 270
            +++  CGF+DSNYFSVVFTRETGMTPS +R
Sbjct: 245 SDISTECGFEDSNYFSVVFTRETGMTPSQWR 275