Pairwise Alignments

Query, 285 a.a., HTH-type transcriptional activator RhaR from Erwinia tracheiphila SCR3

Subject, 278 a.a., DNA-binding transcriptional activator, L-rhamnose-binding (NCBI) from Escherichia coli BW25113

 Score =  169 bits (428), Expect = 6e-47
 Identities = 96/271 (35%), Positives = 147/271 (54%), Gaps = 9/271 (3%)

Query: 7   LVKADYFPSDLMPVVVVDRSPQPSFPLHNHEFNELVIVWRGNGLHVMNDKPWLITCGDLF 66
           L   D+FPS    V +  R PQ  FP H+H+F+E+VIV  G G+HV N +P+ IT G + 
Sbjct: 4   LHSVDFFPSGNASVAIEPRLPQADFPEHHHDFHEIVIVEHGTGIHVFNGQPYTITGGTVC 63

Query: 67  YIGTDDCHSYESVHDLVLDNIIY-CPERFQLGVDLRHFFPYE-----QVAWRLTIRGMSL 120
           ++   D H YE   +L L N++Y  P+RFQ    L    P E        WR+    +  
Sbjct: 64  FVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLLPQELDGQYPSHWRVNHSVLQQ 123

Query: 121 VRGVILQLSQEGHKSDQLSRQLAETLFLQLLLILQRHRYRADCAWQLPEGEQLDLLMSAI 180
           VR ++ Q+ Q+  ++D  S    E LF+QLLL+L++   + +         +L+LL++ +
Sbjct: 124 VRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQENLE---NSASRLNLLLAWL 180

Query: 181 GGQISHHFDLSMFCETHQLSERALKQLFRQQTGMMPAQYLRQLRLCKAKFLLRSTTCLIG 240
               +   +     +   LS R L +  +QQTG+ P +YL +LRL KA+ LLR +   + 
Sbjct: 181 EDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVT 240

Query: 241 EVAARCGFDDSNYFSVVFTRETGMTPSAFRQ 271
           ++A RCGF DSN+FS +F RE   +P   RQ
Sbjct: 241 DIAYRCGFSDSNHFSTLFRREFNWSPRDIRQ 271