Pairwise Alignments

Query, 285 a.a., HTH-type transcriptional activator RhaR from Erwinia tracheiphila SCR3

Subject, 285 a.a., predicted DNA-binding protein (NCBI) from Escherichia coli BW25113

 Score = 62.8 bits (151), Expect = 9e-15
 Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 9/144 (6%)

Query: 138 LSRQLAETLFLQLLLILQRHRYRADCAWQLPEGEQL---DLLMSAIGGQISHHFDLSMFC 194
           LSR   E   +Q L++   H  R+     +P G      D L  +I   +  ++   +  
Sbjct: 143 LSRSPLEQNIIQPLVLSLLHLCRS--VVNMPPGNSQPRGDFLYHSICNWVQDNYAQPLTR 200

Query: 195 ET----HQLSERALKQLFRQQTGMMPAQYLRQLRLCKAKFLLRSTTCLIGEVAARCGFDD 250
           E+      ++   L +LF Q   M   +Y+R +R+ KA+ +L+     I EVA RCGF D
Sbjct: 201 ESVAQFFNITPNHLSKLFAQHGTMRFIEYVRWVRMAKARMILQKYHLSIHEVAQRCGFPD 260

Query: 251 SNYFSVVFTRETGMTPSAFRQQFE 274
           S+YF  VF R+ G+TP  +  +F+
Sbjct: 261 SDYFCRVFRRQFGLTPGEYSARFQ 284