Pairwise Alignments

Query, 346 a.a., IS481 family transposase from Erwinia tracheiphila SCR3

Subject, 384 a.a., CP4-6 prophage; predicted DNA-binding transcriptional regulator (NCBI) from Escherichia coli BW25113

 Score = 54.3 bits (129), Expect = 5e-12
 Identities = 69/310 (22%), Positives = 125/310 (40%), Gaps = 47/310 (15%)

Query: 15  LLNLAEELGNVSKACKIMGVSRDTFYRYQELAAEGGIDALINQNRRVPNLKNRADEATER 74
           +L  +++  N+   C+  G+S  T Y++ +  A+ G   L ++ R               
Sbjct: 20  VLFASQDGANIRSLCRRFGISPATGYKWLQRWAQEGAAGLQDRPR--------------- 64

Query: 75  AVVEYAVEFPAHGQHRTSNELRKKGVFISGSGVRSIWQRHDLENFRKRLKALEEKVAREG 134
                    P H  +R+S+++           +R    RH+    RK  + LE++     
Sbjct: 65  --------IPHHSPNRSSDDITAL--------LRMAHDRHERWGARKIKRWLEDQGHTMP 108

Query: 135 IVLTDAQIAA----LEKKAHDDEASGEIETAHPGYLGSQDTFYVGNLK-GVGRIYQQTFV 189
              T   + A    L   +    A+G  E   P  L   D  + G+   G GR +  T +
Sbjct: 109 AFSTVHNLMARHGLLPGASPGIPATGRFEHDAPNRLWQMD--FKGHFPFGGGRCHPLTLL 166

Query: 190 DTYSKVAHCKLYTSKTPITAADLLNDRVLPFYEAQGLPMLRILTDSGTEYCGKVEQHD-Y 248
           D +S+ + C  + +       + +  +++  +E  GLP  R+  D+G+ +          
Sbjct: 167 DDHSRFSLCLAHCTDE---RRETVQQQLVSVFERYGLPD-RMTMDNGSPWGDTTGTWTAL 222

Query: 249 QLYLAINDIDHTKTKAMSPQTNGICERFHKTILQDFYQVTFRKKLYEDLESLQTDLDNWL 308
           +L+L    I    ++   PQT G  ERFH+++  +  Q     K + D   LQ   D+W 
Sbjct: 223 ELWLMRLGIRVGHSRPYHPQTQGKLERFHRSLKAEVLQ----GKWFADSGELQRAFDHWR 278

Query: 309 WHYNNERTHQ 318
             YN ER H+
Sbjct: 279 TVYNLERPHE 288