Pairwise Alignments

Query, 520 a.a., carbohydrate porin from Erwinia tracheiphila SCR3

Subject, 525 a.a., Porin, LamB type from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  470 bits (1209), Expect = e-137
 Identities = 251/525 (47%), Positives = 326/525 (62%), Gaps = 26/525 (4%)

Query: 14  LLSAAGPAWSATDMSSIEARLAAMEKRLQAAEHCADVAENRAEAAEKQAQQLA----SAQ 69
           L    G + + +  +++E R+AA E R  AAE  A  AE + +A  ++ QQL     +AQ
Sbjct: 9   LAGVLGTSTTVSQAATLEERMAAFEARASAAEKRAAAAEQQTQALARELQQLKLATPAAQ 68

Query: 70  QKNQTTTAQV--------EQRTARLEQRNSSEAEPKPLQVPQKSSDEGFEFHGYARSGLL 121
               T+   V        + R A+LE R  S  +P  +        +GF F GYARSGLL
Sbjct: 69  PAAPTSAPTVAASPQPALDDRVAKLEARQQSMEKPGGVG----HLTDGFSFKGYARSGLL 124

Query: 122 MNSSAAKTQGGPTMTPAGETGGHVGRLGNEPDTYVEMNLEHKQTLANGATTRFKVMMADG 181
           +N      +GGP  TPAG  GG VGRLGNE DTY+  +L  +    NG  ++F V +ADG
Sbjct: 125 INDGLGGGRGGPYTTPAGSVGGAVGRLGNEDDTYMRFDLSKEIYAQNGTRSKFTVSIADG 184

Query: 182 QRTYNDWTSNTSSLNVRQAFVELGHLPTFTDG--FKDATVWAGKRFDRDNFDIHWLDSDV 239
             +YNDWT   SSLNVRQ F EL H+  F     F+++T+WAGKRFDRDNFDIHWLDSDV
Sbjct: 185 VESYNDWTPTESSLNVRQVFTELDHIAAFKGNSVFENSTLWAGKRFDRDNFDIHWLDSDV 244

Query: 240 VFLAGTGAGVYDMRWGEQGHSNLSLYGRTFGDIENS--ENTAQNYILTSNNFY--GPLQF 295
           VFLAGTG G+YD++      SN SL GR +GD      +   ++YILTSN F+  G  Q+
Sbjct: 245 VFLAGTGGGIYDVQMTRDWRSNYSLIGRNYGDFSEGGVDADVESYILTSNQFFDNGQWQW 304

Query: 296 MVSGMRAKDNDDRLDTEGNKVKSDAANEGVHALVGLHNDSFYGLREGLSKTALLYGHGLG 355
           M + + A+ ND  + T  N+     A+ G+H ++  H   F+G REG  KTALLYG GLG
Sbjct: 305 MFNAIGARKND--VGTRTNQAGFAPADSGLHTMLANHQKDFFG-REGFFKTALLYGQGLG 361

Query: 356 AEVKNVGSDGALLSQADTWRLATYGITPLGGGWHLAPALLAQTSRNRYAKGDSYQWATAN 415
           A+VK++G+DG LL  A   RLA YG TP+  GW + P+LLA+ S++RY KGD Y+W T N
Sbjct: 362 AQVKDIGADGELLDDARAVRLAMYGETPIAPGWRIGPSLLAEQSKDRYVKGDDYRWLTLN 421

Query: 416 LRVIQEINQNFEMQYEGSYQYMDLRPEGYNNRNAVSGGFYKLTVAPTLKAGDVGDFLKRP 475
           +R+  EIN NFEM YE S+Q MDL P+GY  RNAV G F+K TVAPT K  D+GD L RP
Sbjct: 422 MRLANEINSNFEMAYELSWQTMDLDPKGYLQRNAVDGNFWKFTVAPTFKP-DMGDLLTRP 480

Query: 476 EIRLFASWMDWDHHLDNYAGSDAFGSDGFKAGGEWNFGVQMETWF 520
           E+R+FAS M+W   LD Y+ +  FG   F +GG W  G+QMETWF
Sbjct: 481 ELRVFASLMNWSSDLDRYSTTGNFGKSDFNSGGVWQLGIQMETWF 525