Pairwise Alignments

Query, 520 a.a., carbohydrate porin from Erwinia tracheiphila SCR3

Subject, 413 a.a., porin LamB from Ralstonia solanacearum UW163

 Score = 60.1 bits (144), Expect = 2e-13
 Identities = 104/446 (23%), Positives = 171/446 (38%), Gaps = 94/446 (21%)

Query: 109 GFEFHGYARSGLLMNSSAAKTQGGPTMTPAGETGGHVGRLGNEPDTYVEMNLEHKQTLAN 168
           G EF+GY R G +   S  +T  G     A  +G  + RLGNE DTY+E  L     L  
Sbjct: 28  GLEFNGYLRVGAV---SERQTDTGGVNKYALGSGAELFRLGNEGDTYLEAGLRKTFHLPG 84

Query: 169 GATTRFKVMMADGQRTYNDWTSNTSSLNVRQAFV-ELGHLPTFTDGFKDATV-WAGKRFD 226
           G T       A    TY +  +N   L  +  +V +  ++ T    F  A + WAGKR+ 
Sbjct: 85  GIT-----WAAAFTGTYWNGQANFRGLGDQGMYVTKEAYVTTSGYAFSPAAIFWAGKRY- 138

Query: 227 RDNFDIHWLDSDVVFLAG----TGAGVYDMRWGEQGHSNLSLY--GRTFGDIENSENTAQ 280
            +  D+H +D     + G    TG G  ++  G+Q    +S+   G+ F   +N  +  +
Sbjct: 139 IEREDVHIVDHFFYSVGGPTIDTGIGATNIPVGDQARLGVSVLRSGQRFSPTDNRRDATR 198

Query: 281 NYILTSNNFYG-PLQFMVSGMRAKDNDDRLDTEGNKVKSDAANEGVHALVGLHNDSFYGL 339
             +    +FY  P+             DRL   G  +  +         + L  D+    
Sbjct: 199 LNV----DFYNIPV----------TRTDRLRVIGEVMHGEFPGGNGGGALTLKYDTPNFP 244

Query: 340 REGLSKTALLYGH--------GLGAEVKNVGSDGALLSQADTWRLATYGITPLGGGWHLA 391
              ++ +  + G         G G      G++   L  +  W+   +      GG  LA
Sbjct: 245 LPSVTNSVWVQGSTGYASLETGFGTLNSPTGTNSMRLIDSVNWQAGRF------GGQALA 298

Query: 392 PALLAQTSRNRYAKGDS--------YQWATA-NLRVIQEINQNFEMQYEGSYQYMDLRPE 442
              + Q   N +  G S          +A A  L+++ E+ +       G  Q +D    
Sbjct: 299 ---VYQRGLNEHGSGGSTGTSIGGRVSYAVAPYLKLLSEVGRTTLRVNGGPLQRLD---- 351

Query: 443 GYNNRNAVSGGFYKLTVAPTLKAGDVGDFLKRPEIRLFASWMDWDHHLDNYAGSDAFGSD 502
                        K TVA  L  G     + RPE+R++A+ ++W     N A   A G+ 
Sbjct: 352 -------------KYTVAVALSTGPA--LMSRPELRIYATRVEW-----NDAALAAQGAQ 391

Query: 503 GFKAGGEWN--------FGVQMETWF 520
                G W+        +G+Q+E+W+
Sbjct: 392 ----WGAWSAGRRSTNLYGIQLESWW 413