Pairwise Alignments

Query, 631 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

Subject, 559 a.a., ATP-dependent DEAD-box RNA helicase DeaD from Pseudomonas putida KT2440

 Score =  455 bits (1171), Expect = e-132
 Identities = 268/568 (47%), Positives = 363/568 (63%), Gaps = 28/568 (4%)

Query: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNN 67
           FA L L   I+ A+   GYE+PS IQ + IP +L+G D++G AQTG+GKTAAF+LP+LN 
Sbjct: 8   FAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67

Query: 68  IDPDLRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127
           ID   R PQ L+LAPTRELA+QVA A   ++K M GVNVVA+YGG     QLRA+R G Q
Sbjct: 68  IDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRNGAQ 127

Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTALFS 187
           IVV TPGRL DHL+R    LS +  LVLDEADEML++GF++D+E I   IP   QT LFS
Sbjct: 128 IVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTVLFS 187

Query: 188 ATMPEAIRRITKRFMKDPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDA 247
           AT+P +IR I +R +++P+ V+IQ+   T   I Q++  V+  +K  A++R LE E+FDA
Sbjct: 188 ATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVEEFDA 247

Query: 248 AIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307
            I FVRTK ATL++A ALE  GY +AALNGD+ Q  RE+ ++ LKDGRLDI++ATDVAAR
Sbjct: 248 LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAAR 307

Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367
           GLDV RI+ V N D+P D ESYVHRIGRTGRAGR GRALL V  RERR+L+ IER     
Sbjct: 308 GLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERVTGQK 367

Query: 368 IPEADLPNADLLGKRRLEKFA---AKVQQQLESSDLDQYRALLSQIQPVAEGEELDMETL 424
           + EA LPNA  +   R++K     A +  + E++  + +  L + +   A         L
Sbjct: 368 VAEARLPNAQAVLDARIKKLTSSLAPLVAEAEATHGELFDRLTTDLGCSA-------RAL 420

Query: 425 AAALLKMAQGERSL---IVPPDAPMRPKREFRDRDDRFERRGDRNDRNDRGPRGDRPERG 481
           A+ALL+ A   ++L    V  + P+ P          F  RG   +R +RG RG+RP+RG
Sbjct: 421 ASALLRKATNGQALDLAAVEREQPLVPS---------FAPRG---ERTERGERGERPDRG 468

Query: 482 GEDRPRRERRDAGDMEL-YRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHST 540
             DR RR      +  +  R  +G  DG+  ++++GAI NEG ++   IG I++  S S 
Sbjct: 469 --DRERRAPLPLAEGRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSL 526

Query: 541 IELPKGMPGEVLQHFTRTRILNKPMNMQ 568
           +ELP+    ++L     TR+  K + ++
Sbjct: 527 VELPEDGLEKLLSKLKDTRVAGKQLKLR 554