Pairwise Alignments

Query, 631 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

Subject, 608 a.a., ATP-dependent RNA helicase RhlE from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  313 bits (802), Expect = 1e-89
 Identities = 219/621 (35%), Positives = 311/621 (50%), Gaps = 44/621 (7%)

Query: 4   FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLP 63
           F  TF DL L   I++A+ + GYE P+PIQ E IP +L+GRD+LG AQTG+GKTAAF+LP
Sbjct: 13  FYMTFDDLNLAPAIVQAVREHGYETPTPIQVEAIPAVLAGRDLLGGAQTGTGKTAAFTLP 72

Query: 64  LLNNIDPDLRAP--------QILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRY 115
           +L+ +    RA         + LVL PTRELA QV E++  + KH+   + V ++GG   
Sbjct: 73  MLHRLANSERAKSRFGGVGIRALVLTPTRELAAQVEESVRVYGKHLSLTSTV-VFGGVGM 131

Query: 116 DVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175
           + Q+ A+++G  I+V TPGRLLD  ++G LDLS +  LVLDEAD ML MGFI DV+ I+A
Sbjct: 132 NPQINAMKRGVDILVATPGRLLDLQQQGFLDLSTVQMLVLDEADRMLDMGFIHDVKKILA 191

Query: 176 QIPDGHQTALFSATMPEAIRRITKRFMKDPQEVRIQSSVTTRPDISQSYWSVYGMRKNEA 235
            +P   Q+ LFSAT  + IR +    +KDP  +++    TT   I+Q    V   +K   
Sbjct: 192 LVPKEKQSLLFSATFSDEIRDLASALLKDPLHIQVTPRNTTVQRITQVIHPVGRGKKKAL 251

Query: 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGR 295
           LV  +   ++   ++F RTK     VAE L ++G ++ AL+G+ +Q  R Q L   K G 
Sbjct: 252 LVHIINQHNWSQVLVFTRTKFGANNVAEYLTKNGIHAMALHGNKSQGARTQALAGFKSGE 311

Query: 296 LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERR 355
           +  L+ATD+AARG+D++ +  VVNY+IP  SE YVHRIGRTGRAG +G A+  V   E  
Sbjct: 312 IRALVATDIAARGIDIDELPHVVNYEIPNISEDYVHRIGRTGRAGNSGEAVNLVSLDEEG 371

Query: 356 LLRNIERTMKLTIPEADLPNADLLGKRRLEKFAAKVQQQLESSDLDQYRALLSQIQPVAE 415
            +  IER  K  IP    P        + E  A   Q     +     R +++     A 
Sbjct: 372 FMMEIERFTKQQIPVQIFPEFMPEPGEKAEPIAMGRQTIWGGAGKPPSREVMAAAAKAAR 431

Query: 416 GEELDMETLAAALLKMAQ------GERSLIVPPDAPMRPKREFRDRDDRFERRGDRNDRN 469
            E L       A     +      G+R       +     R    R +   +R + N   
Sbjct: 432 TEMLQRVREKKANEPQGRGNGGGGGQRQRPAGDGSQADGPRGEGRRGNGGGQRANGNGGG 491

Query: 470 DRGPRGDRPERGGEDRPRRERRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYI 529
             G R  +   GG+   R  R D G  E        D G       GA    G   + ++
Sbjct: 492 GNGQRQGQRHGGGQQGQRPPREDRGFRE--------DRGPREEREPGAERQPG--PNAHL 541

Query: 530 GNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLMGDAQPRPDRGGERRGGGRS 589
           G++++         P G P  +     RT I           DA    +RGG+ +GGG  
Sbjct: 542 GSLRIREPRPRAANPGGQPDPL-----RTSI-----------DAMRTGNRGGKGKGGG-- 583

Query: 590 FGGERREGGRSEGRGEPRRFS 610
            GG  + GG + G  +P R S
Sbjct: 584 -GGGGQRGGNAGGPADPLRTS 603



 Score = 34.3 bits (77), Expect = 2e-05
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 576 RPDRGGERRGGGRSFGGE-----RREGGRSEGRGEPRRFSGERRENRGPR--RDEGTSRR 628
           R   GG +R  G   GG      +R GG  +G+  PR   G R E+RGPR  R+ G  R+
Sbjct: 476 RRGNGGGQRANGNGGGGNGQRQGQRHGGGQQGQRPPREDRGFR-EDRGPREEREPGAERQ 534



 Score = 32.0 bits (71), Expect = 8e-05
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 579 RGGERRGGGRSFGGERREG--GRSEGRGEPRRFSGERRENRGPRRDEG 624
           RG  RRG G   GG+R  G  G   G+ + +R  G ++  R PR D G
Sbjct: 472 RGEGRRGNG---GGQRANGNGGGGNGQRQGQRHGGGQQGQRPPREDRG 516