Pairwise Alignments

Query, 1180 a.a., DNA helicase/exodeoxyribonuclease V, beta subunit (EC 3.1.11.5) from Enterobacter asburiae PDN3

Subject, 1224 a.a., exodeoxyribonuclease V subunit beta from Pseudomonas simiae WCS417

 Score =  737 bits (1903), Expect = 0.0
 Identities = 495/1224 (40%), Positives = 682/1224 (55%), Gaps = 88/1224 (7%)

Query: 11   LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGN-AAFPRPLSVEELLVVTFTEAAT 69
            L  PL+G +LIEASAGTGKTFTI+ALYLRL+LG GG+ ++F R L   ++LVVTFT+AAT
Sbjct: 8    LAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGDESSFGRELLPPQILVVTFTDAAT 67

Query: 70   AELRGRIRSNIHELRIACLRQSTDNP--LYASLLEEIADKQ--QAAQWLLLAERQMDEAS 125
             ELR RIR  + E      R+  + P  L A L  +   +Q    A  L +A + MDEA+
Sbjct: 68   KELRERIRIRLAEAA-RFFREEIEQPDALIADLRADYLPEQWPACANRLDIAAQWMDEAA 126

Query: 126  VFTIHGFCQRMLSLNAFESGMLFEQQLIEDESVLRYQACADFWRRHCYPLQRDIAEAVHA 185
            V TIH +CQRML  +AF+SG LF Q L  D S L  +   D+WR  CYP+  D    V +
Sbjct: 127  VSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMHDDALNWVRS 186

Query: 186  LWKGPEALLRAIDRYLQGEAPVIKSPPPADETLASRHEKIIARIADIKQKWIESVGEIDV 245
             W GP AL+  +      E P  ++  PA+   A   E+  A +  +K  W +   E+  
Sbjct: 187  HWGGPAALMPRVRALFGSERPTDETREPAELITACLQERREA-LTTLKAPWQQWATELRD 245

Query: 246  I----IENSGIDRRKFNRGNQGKWIDKISAWAQEET-RGYQLPDALEKFSRRFLVERTKA 300
            I    +    +D RK        W +KISAWA +ET     +     + +   + E  K 
Sbjct: 246  ICLQAVAAKAVDGRKMQARYFEPWFEKISAWAADETLEQLDIGTGFTRLTPDGMAEAWK- 304

Query: 301  DGIVPEHPLFVAIETLLA--EPLTLNDLMITR-AMTEIRDAVAREKRRRGELGFDDMLSR 357
             G  P+HP   A+  L A  + L   D  + + A   +      EKRRR E+GFDDML R
Sbjct: 305  -GEPPQHPGIDAMAGLKAALDALPTPDAAVLQHAAGWVGKRFEEEKRRRAEMGFDDMLIR 363

Query: 358  LDAALCSENGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWRQQPG---TALLLIGD 414
            L+AAL ++ GE LA+ +R +FPVA+IDEFQDTDP QY IF  I+R +     + L LIGD
Sbjct: 364  LNAALQADGGERLASVVREQFPVALIDEFQDTDPVQYSIFDSIYRIEENHLDSGLFLIGD 423

Query: 415  PKQAIYAFRGADIFTYMKAR-SEVDAHYTLDTNWRSSPGMVESVNALFSRMDT---AFMF 470
            PKQAIYAFRGADI+TY++AR S    H+TL TN+RSS  MVE+VN +F R +T   AF+F
Sbjct: 424  PKQAIYAFRGADIYTYLRARQSTTGRHHTLGTNFRSSHAMVEAVNHVFQRAETGRGAFLF 483

Query: 471  RE------IPFQPVKFAEKNASLRFEFNGETQPAMNFWLLD-GEGYGVADYQNAMAQHCA 523
            RE      +PF  V    +   L+ +  G+T PAMN W L   +      Y+  +A  CA
Sbjct: 484  REPDGVNPVPFHSVLSQGRKEQLQVD--GQTLPAMNLWHLPTDQPVSNVIYRQQLAAACA 541

Query: 524  AQIRDWLSAGAHGKALLWKGDKPAP-VKASDITVLVRSRQEAALIRDALTLLNIPSVYLS 582
              I + L+ G  G A   + D     V+ SDI +LVR  +EA  +R  L    + SVYLS
Sbjct: 542  THIVELLNGGQQGSAGFLQPDGSFKGVRPSDIAILVRDGKEAQAVRGELAARGVRSVYLS 601

Query: 583  NRDSVFETLEAQEMLWLLQAVLAPERESTLRSALASAMLGLNARDIDALNNDEAAWDAVV 642
            ++DSVF   EA ++L  L+A   P+ E  LR+ALA   L L+  +++ LN DE AW++ V
Sbjct: 602  DKDSVFAAQEAHDLLAWLKACAEPDVERPLRAALACVTLNLSLAELERLNQDELAWESRV 661

Query: 643  EEFVRYREKWQKRGVMAMVRELMAQRHIAENMLATAGGERRLTDILHISELLQEAGTQLE 702
             +F  YR  W+ +GV+ M+R L+    + + ++A + GER LT++LH+SELLQ+A ++L+
Sbjct: 662  MQFRGYRTIWRTQGVLPMLRRLLHDFKLPQTLIARSDGERVLTNLLHLSELLQQAASELD 721

Query: 703  SEHALVRWLAQQIADPNSNSSSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIANYRV 762
             E AL+R LA+ +A        Q +RLESD+ LV++VTIHKSKGLEY LV+LPFI + + 
Sbjct: 722  GEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFICSAKP 781

Query: 763  QDQA----FYHDRESFEAVLDLSNAESSLELAEAERLAEDLRLLYVALTRSVWHCSLGVA 818
             D +     YHD E+ ++ + L      +  A+ ERLAEDLRL YVALTR+   C LG+A
Sbjct: 782  VDGSRLPLHYHD-ENGKSHVSLRPTPELIAQADNERLAEDLRLFYVALTRAKHACWLGIA 840

Query: 819  PLFRRRGEKTGESDFHLSALGRLIQHGEP-KDAAGLRQCIESLCTEHVALHIPSQPDNSR 877
             L  +RG  +  S  HLSALG L+  G    ++AGL + +  L     A+H         
Sbjct: 841  DL--KRG-NSNNSVLHLSALGYLLGAGASLGESAGLARWLLDLQEGCTAIHY-------- 889

Query: 878  WQMPELRDSQLHARQVVRTI----------ADDWRVTSYSGLQQHGQSI----------- 916
             Q+PE +D+  H  +   T+          A++W + SYS L + G S+           
Sbjct: 890  GQVPEAQDNLFHPPRNEATLRAPLLPKRKAAENWWIASYSAL-RIGDSMSAATLEAPESP 948

Query: 917  -AQDLM--PKLDVDAAGAGSVPAEPVLTPHQFPRGASPGTFLHSLFE-----ELDFTQPV 968
             AQ L    +LD DA    +     +   H+FPRG +PGTFLH L E       + T   
Sbjct: 949  QAQKLFDDERLDPDAPREVAASGGDI---HRFPRGPNPGTFLHGLLEWAGEDGFNVTPEA 1005

Query: 969  SEEWVLKMLQSGGYDAQWQPVLTDWIRAVLHAPLTTQGISLNQLTAKDKQVEMEFYLPIA 1028
             E+ V        ++  W   L+ W+  +L  PL      ++    +  Q+EMEF+   +
Sbjct: 1006 IEKAVGARCNRRNWEG-WIITLSSWLGHLLQTPLPVNNSHVSLSGLQQYQIEMEFWF-AS 1063

Query: 1029 SPLRAEALDALIREYDPLSAGCPPLNFRQVQGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1088
              +   ALD L+ +Y              + GM KGFIDL F H+GRYY+ DYKSNWLG 
Sbjct: 1064 HKVDVLALDKLVCQYTHNGVSRVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLGP 1123

Query: 1089 SSEAYTQDAMASAMQMHRYDLQYQLYTLALHRYLRHRMADYRYEDHFGGVIYLFLRGVDA 1148
               AYT DAM  ++  HRYDLQY LY LALHR L+ R+ DY Y+ H GG +Y+FLRG  +
Sbjct: 1124 DDSAYTFDAMEQSILDHRYDLQYVLYLLALHRQLKARLPDYDYDRHVGGALYIFLRGTQS 1183

Query: 1149 NDPRSGVFSTRPAAELIEKMDNLF 1172
                 G + TRP  ELIE +D LF
Sbjct: 1184 --ASQGAYFTRPPRELIEGLDLLF 1205