Pairwise Alignments

Query, 1180 a.a., DNA helicase/exodeoxyribonuclease V, beta subunit (EC 3.1.11.5) from Enterobacter asburiae PDN3

Subject, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

 Score = 84.0 bits (206), Expect = 4e-20
 Identities = 116/525 (22%), Positives = 212/525 (40%), Gaps = 97/525 (18%)

Query: 332 MTEIRDAVAREKRRRGELGFDDMLSRLDAALCSENGEALAAAIRTRFPVAMIDEFQDTDP 391
           M E+  A  +   R G + F ++L R  A     +   L    + RF   ++DEFQDT+ 
Sbjct: 173 MREVYTAYEQACERAGVIDFSELLLR--ALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNA 230

Query: 392 QQYRIFRRIWRQQPGTALLLIGDPKQAIYAFRGADIFTYMKARSEV-DAH-YTLDTNWRS 449
            QY   R + R   G +L+ +GD  Q+IY +RGA I    +  ++  DA    L+ N+RS
Sbjct: 231 VQYAWLRLLARG--GDSLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRS 288

Query: 450 SPGMVESVNALFSRMDTAFMFREIPFQPVKFAEKNASLRFEFNGETQPAMNFWLLDGEGY 509
           + G++++ NAL +                             N   +     W   GEG 
Sbjct: 289 TGGILKAANALIA-----------------------------NNSGRLGKELWTDMGEGE 319

Query: 510 GVADYQNAMAQHCAAQIRDWLSAGAHGKALLWKGDKPAPVKASDITVLVRSRQEAALIRD 569
            +  Y        A  + + +      ++L+ +G+       ++I +L RS  ++ ++ +
Sbjct: 320 PLTLYAAYNEHDEARYVVETI------ESLVKQGN-----ARNEIAILYRSNAQSRVLEE 368

Query: 570 ALTLLNIP-SVYLSNRDSVFETLEAQEMLWLLQAVLAPERESTLRSALASAMLGLNARDI 628
           AL    IP  +Y   R   FE  E +  +  L+ +     ++ L   +     G+  + +
Sbjct: 369 ALLRERIPYRIYGGQR--FFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTV 426

Query: 629 DAL-----NNDEAAWDAVVEEFVRYREKWQKRGVMAMVREL---------------MAQR 668
           +A+     ++  + W+A+ +       K +    +    EL               M Q 
Sbjct: 427 EAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQT 486

Query: 669 HIAENMLAT----AGGERRLTDILHISELLQEA-GTQLESEHALVRWLAQQIADPNSNSS 723
            I ++ L T      GE+    + ++ EL+  A   +   E A +  L+  +   +  + 
Sbjct: 487 TIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGHASLEAG 546

Query: 724 SQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIANYRVQDQAFYHDRESFEAVLDLSNA 783
             Q     D   +Q++T+H +KGLE+P V+L       +++  F H              
Sbjct: 547 DTQADEHEDS--IQLMTLHSAKGLEFPYVFL-----VGMEEGLFPH-------------- 585

Query: 784 ESSLELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLFRRRGEKT 828
              + L E  RL E+ RL YV +TR++    +  A   R  G +T
Sbjct: 586 --KMSLEEPGRLEEERRLAYVGITRAMRQLVMTYAETRRLYGSET 628



 Score = 30.0 bits (66), Expect = 7e-04
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGNAAFPRPLSVEELLVVTFTEAATAELRGRI 76
          G +L+ A AG+GKT     L  R+   +    A P       +L VTFT  A AE+R RI
Sbjct: 26 GRQLVLAGAGSGKT---RVLVHRIAWLIQVEQASPH-----SILSVTFTNKAAAEMRQRI 77