Pairwise Alignments

Query, 1180 a.a., DNA helicase/exodeoxyribonuclease V, beta subunit (EC 3.1.11.5) from Enterobacter asburiae PDN3

Subject, 1224 a.a., Chi activated ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease from Pseudomonas putida KT2440

 Score =  752 bits (1941), Expect = 0.0
 Identities = 497/1213 (40%), Positives = 674/1213 (55%), Gaps = 65/1213 (5%)

Query: 11   LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGNAAFPRPLSVEELLVVTFTEAATA 70
            L  PL G +LIEASAGTGKTFTI+ALYLRL+LG GG   F R L   ++LVVTFT+AAT 
Sbjct: 9    LSFPLHGSQLIEASAGTGKTFTISALYLRLILGHGGEQGFERELLPPQILVVTFTDAATK 68

Query: 71   ELRGRIRSNIHEL-RIACLRQSTDNPLYASLLEEIADKQ--QAAQWLLLAERQMDEASVF 127
            ELR RIR+ + E  R         +PL   L ++   +   + A  L +A + MDEA+V 
Sbjct: 69   ELRERIRARLAEAARFFRGELEGADPLLHQLRDDYPQENWPRCAGRLEIAVQWMDEAAVS 128

Query: 128  TIHGFCQRMLSLNAFESGMLFEQQLIEDESVLRYQACADFWRRHCYPLQRDIAEAVHALW 187
            TIHG+CQRML  +AF+SG LF Q L  D S L  Q   D+WRR CY +Q D    V   W
Sbjct: 129  TIHGWCQRMLREHAFDSGSLFTQTLETDHSELLGQVMRDYWRRFCYGMQGDALAWVRGNW 188

Query: 188  KGPEALLRAIDRYLQGEAPVIKSPPPADETLASRHEKIIARIADIKQKWIESVGEIDVII 247
              P+ALL  I R L G     ++ P     + +  ++  A++A IK  W +   E+  I 
Sbjct: 189  GSPDALLPRI-RPLFGRVRAQQNGPEPAALIQASLQQRGAQLARIKAPWAQWAEELRQIC 247

Query: 248  ENS----GIDRRKFNRGNQGKWIDKISAWAQEETR-GYQLPDALEKFSRRFLVERTKADG 302
             ++     +D RK        W DK+ AWA +E      L     + +   + E  K  G
Sbjct: 248  RDALAAKQVDGRKMQARYFEPWFDKLCAWASDEQLVELDLGTGFTRLTPAGMAEAWK--G 305

Query: 303  IVPEHPLFVAIETLLAEPLTLNDL---MITRAMTEIRDAVAREKRRRGELGFDDMLSRLD 359
              PEHP   A++ L  +   L+     ++  A + +      EKRRR E+GFDDML RL 
Sbjct: 306  EPPEHPALNAMQHLQQQLQALDSPDAPLLEHAASWVSARFEVEKRRRAEMGFDDMLVRLQ 365

Query: 360  AALCSENGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR---QQPGTALLLIGDPK 416
             AL SE GE LA+ IR +FPVA+IDEFQDTDP QY IF RI++    +  T L +IGDPK
Sbjct: 366  HALASEAGERLASLIREQFPVALIDEFQDTDPVQYGIFERIYQISENRAETGLFMIGDPK 425

Query: 417  QAIYAFRGADIFTYMKARSEVDAH-YTLDTNWRSSPGMVESVNALFSRMDT------AFM 469
            QAIYAFRGADI+TY+ AR       ++LDTN+RSS  MV +VN +F + +       AF+
Sbjct: 426  QAIYAFRGADIYTYLAARRATSGRLHSLDTNYRSSKAMVAAVNQVFLQAEAREAGRGAFL 485

Query: 470  FREIPFQPVKFAEKNASLRFE---FNGETQPAMNFWLLDGEG-YGVADYQNAMAQHCAAQ 525
            FRE    P+ F E  A  R E    +GE   A+  W L+ E     + Y+  MA  CA+ 
Sbjct: 486  FREADDNPLPFIEVRAKGRGEQLLIDGEVSAALQCWQLESEEPVSSSVYRQQMAASCASH 545

Query: 526  IRDWLSAGAHGKALLWKGD-KPAPVKASDITVLVRSRQEAALIRDALTLLNIPSVYLSNR 584
            I   L+ G  G +     + +      SDI +LVR   EA ++R  L    + SVYLS++
Sbjct: 546  IVALLNGGQQGTSGFRNAEGELRACLPSDIAILVRDGHEAQMVRAELAAREVRSVYLSDK 605

Query: 585  DSVFETLEAQEMLWLLQAVLAPERESTLRSALASAMLGLNARDIDALNNDEAAWDAVVEE 644
            DSVF   EA ++L  L+A   P+ E  L++ALAS  LGL+   +D LN DE  W++ V  
Sbjct: 606  DSVFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLGLSLAALDRLNQDERVWESWVMR 665

Query: 645  FVRYREKWQKRGVMAMVRELMAQRHIAENMLATAGGERRLTDILHISELLQEAGTQLESE 704
            F  YR+ WQ++GV+ M+R L+    +   ++  + GER LT++LH++ELLQ+A  +L+ E
Sbjct: 666  FRLYRDTWQRQGVLPMLRHLLHDFQLPRTLIRRSDGERVLTNLLHLAELLQQAAGELDGE 725

Query: 705  HALVRWLAQQIADPNSNSSSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIANYRVQD 764
             AL+R LA+ +A        Q +RLESD+ LV++VTIHKSKGLEYPLV+LPFI   +  D
Sbjct: 726  QALIRHLAEHLASSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVYLPFICTSKPVD 785

Query: 765  QA----FYHDRESFEAVLDLSNAESSLELAEAERLAEDLRLLYVALTRSVWHCSLGVAPL 820
             +     +HD E   A L L+  +  +E A+ ERLAEDLRLLYVALTR+   C LGVA L
Sbjct: 786  GSRLPLAWHDSEG-NAHLTLTPDQEQIERADDERLAEDLRLLYVALTRAQHACWLGVADL 844

Query: 821  FRRRGEKTGESDFHLSALGRLIQHG-EPKDAAGLRQCIESLCTE--HVALHIPSQPDNSR 877
              +RG     S  H SA G L+  G     +A L   +++L     H+      Q D   
Sbjct: 845  --KRG-NLKSSQLHRSAFGYLLGGGLALAGSAQLTDWLQALAASCPHITCPGLPQADEQM 901

Query: 878  WQMPELRDSQLHARQVVRTIADDWRVTSYSGLQQHGQSI------AQDLMPKLDVDAAGA 931
            ++MP      L AR+     A+ W + SYS L+   Q++      AQ L+     DA   
Sbjct: 902  YRMPHAERELLPARRPRHAAAEHWWIASYSALRVGDQTLGADSSQAQQLLDDEVPDAQVL 961

Query: 932  GSVPAEPVLTPHQFPRGASPGTFLHSL--------FEELDFTQPVSEEWVLKMLQSGGYD 983
              VPA+     H+FPRG +PGTFLH L        F E+     + E  V +      + 
Sbjct: 962  REVPADSG-DIHRFPRGPNPGTFLHGLLEWAGREGFSEVSANPQLIERTVGQRCNRRDW- 1019

Query: 984  AQWQPVLTDWIRAVLH----APLTTQGISLNQLTAKDKQVEMEFYLPIASPLRAEALDAL 1039
            A W P L+ W++ +L      P + Q ++L QL  +  Q+EMEF+   +  + AE LD L
Sbjct: 1020 AGWIPTLSHWMQRLLSEALPLPGSDQSVTLGQL--RHYQIEMEFWF-ASHRVDAEQLDRL 1076

Query: 1040 IREYDPLSAGCPPLNFRQVQGMLKGFIDLVFRHEGRYYLLDYKSNWLGESSEAYTQDAMA 1099
            +  +       P      + GM KGFIDL F  +GRYY+ DYKSNWLG   +AY   AM 
Sbjct: 1077 VARHTHPGLARPAAQPTVLNGMFKGFIDLAFELDGRYYVTDYKSNWLGADIQAYDAMAME 1136

Query: 1100 SAMQMHRYDLQYQLYTLALHRYLRHRMADYRYEDHFGGVIYLFLRGVDANDPRSGVFSTR 1159
             A+  HRYDLQY LY LALHR LR R+ADY Y+ H GG +++FLRG  A+    GV+  +
Sbjct: 1137 KAILEHRYDLQYVLYLLALHRQLRARLADYDYDRHVGGALFIFLRG--ASSSGHGVYHAK 1194

Query: 1160 PAAELIEKMDNLF 1172
            P  ELIE +D LF
Sbjct: 1195 PPRELIESLDALF 1207