Pairwise Alignments

Query, 606 a.a., DNA helicase/exodeoxyribonuclease V, alpha subunit (EC 3.1.11.5) from Enterobacter asburiae PDN3

Subject, 691 a.a., ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease from Pseudomonas putida KT2440

 Score =  433 bits (1114), Expect = e-125
 Identities = 286/656 (43%), Positives = 376/656 (57%), Gaps = 65/656 (9%)

Query: 7   LLDA-VEQRLLRHLDVQFAMMVA----GEEPAVMLAAAILSKDAGEGHVCLPLSRLAVDE 61
           LLD  VE+  LR LD  F   +     G +P ++LAAA+ S   G GHVCL L +   + 
Sbjct: 33  LLDRWVERGWLRALDRAFVSFLEERAPGSDPLLLLAAALASHQLGHGHVCLDLQQTLAEP 92

Query: 62  ----KMPPALQACFALLG---------DAVDWQEILLGSPAVSGADT----GTPMILVGE 104
                +PP   A    L          D   W + +  SP V+  DT      P++  GE
Sbjct: 93  DFALSLPPEGDALIGPLLLPSQLLANLDLNAWLQRISASPLVAAGDTPGQQARPLVRSGE 152

Query: 105 RLYLNRLWRNELTVARFFSETNAPLPCDEAQLRQTLDTLFTSD---DATDWQKVAAAVAL 161
           RLYL R W  E  + +   +  +      A L + L  LF         DWQK+A A+A 
Sbjct: 153 RLYLRRYWSYERRIDQALRQRLSQAEAPPADLPERLAQLFEGGAPAGQVDWQKLACALAT 212

Query: 162 TRRISVISGGPGTGKTTTVAKLLAALIQLSSEQ--KCRIRLAAPTGKAAARLTESLGGAL 219
               S+I+GGPGTGKTTTV +LLA L   + EQ    RIRLAAPTGKAAARLTES+G  +
Sbjct: 213 RAGFSIITGGPGTGKTTTVVRLLALLQAPAVEQGRPLRIRLAAPTGKAAARLTESIGQQV 272

Query: 220 QKLPLTREQLALFPNEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMIDLTMMS 279
           ++L ++ E     P E ST+HRLLG++PGS+  R+HAGNPL LDVLVVDEASMIDL MM+
Sbjct: 273 ERLQVSAEVRGQIPTEVSTVHRLLGSRPGSRHFRHHAGNPLPLDVLVVDEASMIDLEMMA 332

Query: 280 RLIDALPPHARVIFLGDRDQLASVEAGAVLGDICTYASLG-YTAERAQELARLTGCSLTS 338
            L+DALPP AR++ LGD+DQLASVEAGAVLGD+C  A  G Y+   A  L +++G SL  
Sbjct: 333 NLLDALPPRARLVLLGDKDQLASVEAGAVLGDLCRDAEEGFYSPATAAWLQQVSGESLAG 392

Query: 339 ENHSLAGALRDSLC----LLQKSYRFGSDSGIGQLAAAVNRGDRRTTTAVFDGTFTDIEK 394
                    R  L     +L+ S RFG  SGIGQLA  VNR D      +      D+  
Sbjct: 393 SGLKAGDEQRHPLAQQVVMLRFSRRFGEGSGIGQLARLVNRQDAHAARNLLAAPPADVHS 452

Query: 395 KSLQSGEE--YQAMLDDAL-------QGYQHFLTGVQQ--------------QSTPEQVI 431
            SL+  ++  +  +L D L       QGY+ +L  + +              +    +V+
Sbjct: 453 LSLKHEQDRAFDRLLLDGLNRGTDGPQGYRSYLRTLGRYRPALDTAFDDPAWEQWAGKVL 512

Query: 432 AAFGEYQLLCALREGPFGVRGLNDRLEQLLAQKRKINRTPHSRWYEGRPVMISRNDSTLG 491
            +F ++QLLCA+R G +GV GLN+R+ ++L     I+      WYEGRPV+++RND  LG
Sbjct: 513 RSFEDFQLLCAVRRGAWGVEGLNERVARVLHNAGLID--SQQPWYEGRPVLVTRNDYGLG 570

Query: 492 LFNGDIGIAL----DCGQG-LRVWFQMPDGS--VKSFQPSRLPEHETAWAMTVHKSQGSE 544
           L NGDIGIAL    + GQ  LRV F   DGS  V+   PSRL E ET +AMTVHKSQGSE
Sbjct: 571 LMNGDIGIALRLPDEHGQPLLRVAFPRNDGSGGVRFVLPSRLNEVETVFAMTVHKSQGSE 630

Query: 545 FNHAALILPTQLSPVITRELIYTAITRARQRLSLYADER-VLVQAIATRTERRSGL 599
           F+H AL+LP  L+PV+T+EL+YT ITRA+   SL    + +  +A+A +  R SGL
Sbjct: 631 FSHTALVLPEALNPVLTKELVYTGITRAKHCFSLVEPRQGIFEEAVARKVRRISGL 686