Pairwise Alignments

Query, 684 a.a., Superfamily I DNA and RNA helicases from Enterobacter asburiae PDN3

Subject, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

 Score =  105 bits (261), Expect = 1e-26
 Identities = 102/341 (29%), Positives = 154/341 (45%), Gaps = 52/341 (15%)

Query: 197 LNPAQARAVVNGEQSLLVLAGAGSGKTSVLVARAGWLLTTGEAVADQILLLAFGRKAAQE 256
           LN AQ +AV       LVLAGAGSGKT VLV R  WL+   +A    IL + F  KAA E
Sbjct: 13  LNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAE 72

Query: 257 MDERIQERL--HTRDITARTFHALALHIIQ---QGSKKVPSISKLENDAQARQALFIKTW 311
           M +RI++ L  +   +   TFH LA  +++   Q ++ V +   L++D Q R    IK  
Sbjct: 73  MRQRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQR---LIK-- 127

Query: 312 RQQCSEKKAQAKGWRQWLEEELSWEVPEGSFWQDDKLARRLGSRLDRWVSLMRMHGGTQA 371
                      +  R+   +E  W                  +R  +W    +   G + 
Sbjct: 128 -----------RVMRELGLDEQKWP-----------------ARQAQWFINGQKDEGLRP 159

Query: 372 EMIESAPEAIRDLFSKRVKLMAPLLKAWKTALKEENAVDFSGLIHQAIIILEK-----GR 426
           + I++      DLF   +  M  +  A++ A +    +DFS L+ +A+ +          
Sbjct: 160 QHIQAG----GDLF---LATMREVYTAYEQACERAGVIDFSELLLRALDLWRDHPGLLEH 212

Query: 427 FVSPWKHILVDEFQDISPQRAALLSALRAQNKHTSLFAVGDDWQAIYRFSGAQLSLTTAF 486
           +   ++H+LVDEFQD +  + A L  L       SL AVGDD Q+IY + GA++     +
Sbjct: 213 YQRRFRHVLVDEFQDTNAVQYAWLRLLARGG--DSLMAVGDDDQSIYGWRGAKIENIHQY 270

Query: 487 HHYFGEGERSDLDTTYRFNSRIGEIANRFIQQNPHQLAKPL 527
              F + E   L+  YR    I + AN  I  N  +L K L
Sbjct: 271 TADFPDAEMIRLEQNYRSTGGILKAANALIANNSGRLGKEL 311



 Score = 45.1 bits (105), Expect = 1e-08
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 14/120 (11%)

Query: 544 DQLEPLLDKLSGYAKPDERILVLARYHHLKPAALEKAATRWPKLQ--LEFMTIHASKGQQ 601
           + LE L+     +   DE   +      L  A+LE   T+  + +  ++ MT+H++KG +
Sbjct: 510 ENLEELVSAARNFESTDEDADLSPLSAFLGHASLEAGDTQADEHEDSIQLMTLHSAKGLE 569

Query: 602 ADYVIVVGLKEGSDGFPAPARESVMEEALLPVPEDFPDAEERRLLYVALTRARHRVWLLF 661
             YV +VG++EG      P + S+ E   L         EERRL YV +TRA  ++ + +
Sbjct: 570 FPYVFLVGMEEGL----FPHKMSLEEPGRL--------EEERRLAYVGITRAMRQLVMTY 617