Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1168 a.a., transcription-repair coupling factor from Rhizobium sp. OAE497

 Score =  721 bits (1862), Expect = 0.0
 Identities = 431/1167 (36%), Positives = 669/1167 (57%), Gaps = 46/1167 (3%)

Query: 13   AGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIRQFTDSL-VFSLA 71
            A +   +G +       L+AE+A R   PV  +  D Q    L   +      + V +L 
Sbjct: 13   ASEPLTIGNVPAGMEPLLLAELA-RAGKPVAYILSDGQRMADLEQMLAFVAPEIPVLTLP 71

Query: 72   DWETLPYDSFSPHQEIISSRLSTLYQLPTMQR----GVLIVPVNTLMQRVCPHSYLHGHA 127
             W+ LPYD  SP  +  + RL+ L  L   Q+     +++V VN ++Q+V P   +   A
Sbjct: 72   AWDCLPYDRVSPSADTSARRLAALSGLIAHQKKPHAAIVLVTVNAMLQKVAPQEVIESLA 131

Query: 128  LVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDFFDD 187
               + G ++  D +  +L+  G+  V  V E GEYA RG +LD++  GS++P RLDFF D
Sbjct: 132  FSARPGNQVRMDDIAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGSEEPVRLDFFGD 191

Query: 188  EIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRDAEHIYQQ 247
             ++S+R FD  +QRT  +V S++L P  E       I  FR  +   F      + +Y  
Sbjct: 192  TLESIRSFDPASQRTTGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAFGAATRDDALYLA 251

Query: 248  VSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASR-------FESETR 300
            VS+G   AG+E+W PLF+ E L  +F Y     L+ +    +A+  R       +++   
Sbjct: 252  VSEGRRYAGMEHWLPLFY-ERLETVFDYLKGFQLVTDHTVREAAEERSKLVLDYYDARLS 310

Query: 301  ARFENRGV----DPMRPLLPPEALWLRTDELNAELKRWPRMQL----KTDSLADKAANTN 352
            +   ++G      P +P+ P + L+L +      L     +++    + +  A +  N +
Sbjct: 311  SGQPSKGQMAQGTPYKPVTPGQ-LYLDSKSFAGTLDALNAIRMTPFNEHEGEARRVVNID 369

Query: 353  LA-----FRTLPDLAVQAQQKSPLDNLRKFL---ESFTGPVVFSVESEGRREALGELL-- 402
                    R+  +    A++ +  D + KF+    +    V+ +  +EG  + L ++L  
Sbjct: 370  ARQGERWARSNAEGGGNAERVNVFDAVVKFIADKRAGGAKVLITAWTEGSLDRLLQVLNE 429

Query: 403  -GRIKVAPKRILR--LSEATGNGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQ 459
             G  +V P   L+  +S A G     +  + E GF     +L +I E D+LG+R+ RR +
Sbjct: 430  HGLERVKPIEALKDVVSLAKGEAASAVF-SLESGF--ETGDLIVIGEQDILGDRMVRRSK 486

Query: 460  DSRRTINPDTLIRNLAELHPGQPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKL 519
              +R  +    I  +A L  G  +VH EHG+GR+ G+ T+EA G     L L YA++AKL
Sbjct: 487  RRKRAAD---FISEVAGLDEGSIVVHAEHGIGRFIGLRTIEAAGAPHACLELQYADEAKL 543

Query: 520  YVPVSSLHLISRYAGGAEENAPLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQ 579
            ++PV ++ L+SRY G   E A L KLGG AW   + K  +++ D+A  L+ I A+R  + 
Sbjct: 544  FLPVENIDLLSRYGGEGTE-AMLDKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLTRH 602

Query: 580  GFAFKHDKEQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639
                   +  Y  F   FP++ T DQ  AI AV  D+     MDRLVCGDVGFGKTEVA+
Sbjct: 603  APVLTTPEGLYDEFAARFPYDETEDQDTAIEAVRGDLAAGRPMDRLVCGDVGFGKTEVAL 662

Query: 640  RAAFLAVENNKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQA 699
            RAAF+A  N  QVAV+VPTTLL++QHF  F +RF   PVR++  SR   +K+     ++ 
Sbjct: 663  RAAFVAAMNGVQVAVVVPTTLLSRQHFKTFSERFRGLPVRVQQASRLVGSKDLALTKKEV 722

Query: 700  SEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPI 759
            ++GK DI++GTH LL + + + +LGLLI+DEE  FGV+HKER+K +++DV +LTL+ATPI
Sbjct: 723  ADGKTDIVVGTHALLGAGINFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPI 782

Query: 760  PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDV 819
            PRTL +AM+G+R+LS+I TPP  R+AV+TF+  +D+LV+RE ++RE  RGGQ +Y+   +
Sbjct: 783  PRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCPRL 842

Query: 820  ENIQKAADRLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879
             +++     L   VPE ++A+ HGQM   ELE +MN F+  R++VL+ TTI+E+G+D+PT
Sbjct: 843  ADLEDVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVPT 902

Query: 880  ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939
            ANT+I+ RAD FGLAQL+QLRGRVGRS  +A+A    P  K +T  A++RL+ + SL+ L
Sbjct: 903  ANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATAERRLKVLQSLDTL 962

Query: 940  GAGFALATHDLEIRGAGELLGEDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999
            GAGF LA+HDL+IRGAG LLGE+QSG ++ +GF LY ++LE AV  +K   E  + D T 
Sbjct: 963  GAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDE--IAD-TG 1019

Query: 1000 QQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKKENELEEIKVELIDRFGLLPDPARN 1059
               ++ +  P ++PD+++PD++ R++ Y+R+    +  E++    E+IDRFG +P   ++
Sbjct: 1020 WSPQISVGTPVMIPDNYVPDLHLRMALYRRLGEITELKEIDGFGAEMIDRFGPMPIEVQH 1079

Query: 1060 LLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRL 1119
            LL I  ++   +   + KL+   KG V++F  K   NP  L+G + KQ    ++     L
Sbjct: 1080 LLKIVYVKSLCRIANVEKLDAGPKGIVVQFRNKEFPNPANLVGYIGKQGAMAKIRPDHSL 1139

Query: 1120 KFTQELTERKTRMDWVRNFMRQLEENA 1146
              T++L   + R+      M QL E A
Sbjct: 1140 FLTRDLPTPEKRLQGAAVIMTQLAELA 1166