Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1143 a.a., transcription-repair coupling factor from Ralstonia solanacearum PSI07

 Score = 1052 bits (2721), Expect = 0.0
 Identities = 567/1141 (49%), Positives = 750/1141 (65%), Gaps = 19/1141 (1%)

Query: 11   VKAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNAL---RLHDEIRQFT-DSL 66
            VK G +     L G+A A L+A   E+H G V ++A    NA+   RL +E+R F   + 
Sbjct: 12   VKPGQRFVFSGLQGSADALLLARYLEQHRGTVPMLAVVCANAVDAQRLAEELRWFAPQAR 71

Query: 67   VFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSYLHGH 126
            V  L DWETLPYD+FSPHQ++IS RL+TL+ L      +L+VP +T +QR+ P S+L  +
Sbjct: 72   VKLLPDWETLPYDNFSPHQDLISERLATLHDLQGGACDILLVPASTALQRIAPPSFLAAY 131

Query: 127  ALVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDFFD 186
                KKG+RL   AL+AQ   AGY HV  VM  GEY+ RG L+DL+PMGS  PYRLD F 
Sbjct: 132  TFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPMPYRLDLFG 191

Query: 187  DEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRDAEHIYQ 246
            DEID++R FD DTQR+L  V  + LLP  EFP D+ A   FR +WR+ FE       IY+
Sbjct: 192  DEIDTIRAFDPDTQRSLYPVNEVRLLPGREFPMDEAARTAFRGRWREVFEGDPTRAPIYK 251

Query: 247  QVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETRARFENR 306
             +  G   AGIEY+ PLFF E    LF Y PA   +   GDI+ +  RF ++T  R+   
Sbjct: 252  DIGNGVPSAGIEYYLPLFF-ETTATLFDYLPAGVHLALVGDIEGAVRRFWADTTQRYNFM 310

Query: 307  GVDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPDLAVQAQ 366
              D  RPLL P AL+L  +      K   R+ L+ +       +  L+   LP++AV  +
Sbjct: 311  RHDRDRPLLAPSALYLDEEAFFIAAKPHARLVLRAEP-----GDAPLSL-PLPNVAVNRR 364

Query: 367  QKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATGNGRYLM 426
             + PL NL  FL      V+   ES GRRE L ++L    + P+ +   ++  G     +
Sbjct: 365  AEDPLVNLESFLMHGNYRVMICAESAGRRETLAQMLAASGLHPEGVTDCADLVGGDARFV 424

Query: 427  IGAAE--HGFIDTLNNLALICESDLLGERV---ARRRQDSRRTINPDTLIRNLAELHPGQ 481
            +G A    GFI     +A I E++L  + V    RR+Q+    +  D ++R+LAEL  G 
Sbjct: 425  LGVAPLYQGFILGDERIAFITETELYAQAVRRGGRRKQEQASAV--DAMVRDLAELKIGD 482

Query: 482  PIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 541
            P+VH EHG+GRYQG+ +++ G  + E+L L Y   +KLYVPV  LH+ISRY+G   + AP
Sbjct: 483  PVVHSEHGIGRYQGLVSIDMGHGEEEFLHLDYDKGSKLYVPVHQLHVISRYSGADPDTAP 542

Query: 542  LHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFET 601
            LH+LG   W +A+++AA+++RD AAELL++YA+RA +QGFAF      Y+ F +SF F+ 
Sbjct: 543  LHQLGSGQWEKAKRRAAQQIRDTAAELLNLYARRALRQGFAFPLTPNDYEAFAESFGFDE 602

Query: 602  TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLL 661
            TPDQA AI AV++DM     MDRLVCGDVGFGKTEVA+RAAF+AV   KQVA+L PTTLL
Sbjct: 603  TPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLL 662

Query: 662  AQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKWK 721
            A+QH+    DRFA+WPVRI  +SRF++ KE    +E  + G IDI+IGTHKLL  DVK+ 
Sbjct: 663  AEQHYQTLADRFADWPVRIAEISRFKNKKEIDAAVEAINAGTIDIVIGTHKLLSPDVKFD 722

Query: 722  DLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781
             LGL+I+DEEHRFGVR KE +K +RA+VD+LTLTATPIPRTL MA+ G+RD S+IAT P 
Sbjct: 723  RLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQ 782

Query: 782  RRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAIG 841
            +RLA+KTFVR  ++ V+REAILRE+ RGGQVY+L+N+VE I+    +L  LVPEAR+A+ 
Sbjct: 783  KRLAIKTFVRREEDGVLREAILRELKRGGQVYFLHNEVETIENKRAKLEALVPEARVAVA 842

Query: 842  HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901
            HGQM ERELERVM DF  QR N+L+CTTIIETGID+PTANTI+I R+D FGLAQLHQLRG
Sbjct: 843  HGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRSDKFGLAQLHQLRG 902

Query: 902  RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961
            RVGRSHHQAYA+LL      +T  AQ+RLEAI  +E+LG+GF LA HDLEIRGAGE+LG+
Sbjct: 903  RVGRSHHQAYAYLLVHDADGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGD 962

Query: 962  DQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVN 1021
             QSG +  IGF LY ++L  AV +LKAG+EP L    +  TE+ L  P+LLP D+  DV 
Sbjct: 963  KQSGEISEIGFQLYTDMLNQAVKSLKAGKEPDLMAPLAATTEINLGTPALLPSDYCGDVQ 1022

Query: 1022 TRLSFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGN 1081
             RLS YKR+A+ +    ++ I+ ELIDRFG LP  A++L++  RLR  AQ LGIRK++ +
Sbjct: 1023 ERLSLYKRLANCESGETIDNIQEELIDRFGKLPPQAQSLIETHRLRIAAQPLGIRKIDTS 1082

Query: 1082 EKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMRQ 1141
                 ++F     V+ + +I L+QK  Q  +L G  RL+      E       +R+ MRQ
Sbjct: 1083 ADAVTLQFVPNPPVDAIKIIDLVQKNRQ-IKLAGQDRLRIENIPAETAALAQAIRHTMRQ 1141

Query: 1142 L 1142
            L
Sbjct: 1142 L 1142