Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1160 a.a., Transcription-repair coupling factor from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 1027 bits (2656), Expect = 0.0
 Identities = 552/1137 (48%), Positives = 746/1137 (65%), Gaps = 23/1137 (2%)

Query: 24   GAACATLVAEIAERHPGP---VILVAPDMQNALRLHDEIRQFTDSLVFSL-ADWETLPYD 79
            G+A A ++A++  R         +V  D  +A RL DE+  F   L  +L  DWETLPYD
Sbjct: 19   GSADALMLAQLGAREKAEGRLTAIVTADANDAQRLIDEMAFFAPGLRCALFPDWETLPYD 78

Query: 80   SFSPHQEIISSRLSTLYQLPTMQRG----VLIVPVNTLMQRVCPHSYLHGHALVMKKGQR 135
            +FSPHQ++IS RL+TL+++    +     V+++P  T + R+ P S+L G+    K  Q+
Sbjct: 79   TFSPHQDLISERLATLWRISQRDKDTGADVVLIPATTALYRLAPPSFLAGYTFHFKVKQK 138

Query: 136  LSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDFFDDEIDSLRVF 195
            L    L+ QL  AGY+HV QV+  GEYA RG L+DL+PMGS  PYR+D FDDEIDS+R F
Sbjct: 139  LDEARLKGQLTLAGYQHVTQVVSPGEYAVRGGLIDLFPMGSLVPYRVDLFDDEIDSIRTF 198

Query: 196  DADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRDAEHIYQQVSKGTLPA 255
            D D+QR+L  V  + LLP  EFP D  A   FRS+WR+  E       IY+ +  G   A
Sbjct: 199  DPDSQRSLYPVNEVRLLPGREFPMDDAARAKFRSRWRELLEGDPTKSRIYKDIGNGVATA 258

Query: 256  GIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETRARFENRGVDPMRPLL 315
            GIEY+ PLFF++    +F Y   +  +V  GD++ +  RF  +T+ R      D  RP+L
Sbjct: 259  GIEYYLPLFFDDTA-TVFDYLGTDATVVLHGDLEPAFQRFWQDTKDRHRLLRGDAERPVL 317

Query: 316  PPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPDLAVQAQQKSPLDNLR 375
            PPEAL+L T++         +  ++    A +        + L DL+V    + PL  L+
Sbjct: 318  PPEALFLATEQFYTRANEHAQYVVRP---AQQDIEHGAHVQKLGDLSVVRGAEDPLARLQ 374

Query: 376  KFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSE--ATGNGRYLMIGAAEHG 433
              + +    V+   ES+GRRE+L + L    V P     L+E  A+     +   A   G
Sbjct: 375  AHIRNTAHRVLLLAESDGRRESLLDFLRASGVHPPAFDSLAEFQASDEKTGIATAALAVG 434

Query: 434  FIDTLNNLALICESDLLGER-VARRRQDSRRTINPDTLIRNLAELHPGQPIVHLEHGVGR 492
            F    + +  + E++L       RRR+   +  + D LI++L+EL+ G P+VH  HG+GR
Sbjct: 435  FSWLDDGIDFVTETELFAAGPTTRRRRKQEQVSDVDALIKDLSELNVGDPVVHNAHGIGR 494

Query: 493  YQGMTTLEAGGIKG-------EYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKL 545
            Y+G+  ++ G           E+L L YA+ A LYVPVS L LI RY G + + APLHKL
Sbjct: 495  YRGLVNMDMGEKNPDGSPALQEFLHLEYADKAVLYVPVSQLQLIGRYTGVSADEAPLHKL 554

Query: 546  GGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFETTPDQ 605
            G   W +A++KAAE+VRD AAELL+IYA+RAA+QG AF++  + Y++F + F FE T DQ
Sbjct: 555  GSGQWDKAKRKAAEQVRDAAAELLNIYARRAARQGHAFRYSAQDYEVFANDFGFEETADQ 614

Query: 606  AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLLAQQH 665
              AI+AV+ DM  P  MDRLVCGDVGFGKTEVA+RAAF+AV   +QVA L PTTLLA+QH
Sbjct: 615  RGAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGRQVAFLAPTTLLAEQH 674

Query: 666  FDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKWKDLGL 725
            F    DRF+ WPV++  +SRFRS KE T   +  ++G +DI++GTHKLL   VK+KDLGL
Sbjct: 675  FQTLSDRFSKWPVKVAEMSRFRSAKEITAAAKGLADGSVDIVVGTHKLLSESVKFKDLGL 734

Query: 726  LIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785
            LI+DEEHRFGVRHKE +KA+RA+VD+LTLTATPIPRTL MA+ G+RDLS+IAT P RRLA
Sbjct: 735  LIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLA 794

Query: 786  VKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAIGHGQM 845
            +KTFVR   N V+REA+LRE+ RGGQVY+L+N+VE I+    +L E++PEARIAI HGQM
Sbjct: 795  IKTFVRNEGNGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEILPEARIAIAHGQM 854

Query: 846  RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 905
             ERELERVM DF  QRFNVL+C+TIIETGID+PTANTI++ RAD FGLAQLHQLRGRVGR
Sbjct: 855  PERELERVMRDFVAQRFNVLLCSTIIETGIDVPTANTIVMSRADKFGLAQLHQLRGRVGR 914

Query: 906  SHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 965
            SHHQAYA+L+ P  + +T  A +RL+AI  +E+LG+GF LA HDLEIRGAGE+LGE QSG
Sbjct: 915  SHHQAYAYLMVPDIEGLTKHAAQRLDAIQQMEELGSGFYLAMHDLEIRGAGEVLGEHQSG 974

Query: 966  SMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLS 1025
            +M  +GF LY E+L  AV +LKAGREP L    S  T++ L  P+LLP+D+  DV+ RLS
Sbjct: 975  NMLEVGFQLYNEMLSEAVSSLKAGREPDLLSPLSVTTDINLHAPALLPNDYCGDVHLRLS 1034

Query: 1026 FYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGG 1085
            FYK++A+AK  ++++ +  E++DRFG LP  A+ L+D+ RLR  +   G+ K++      
Sbjct: 1035 FYKKLATAKSTDQVDALLEEIVDRFGKLPPQAQTLIDVHRLRCISTPYGVVKVDAAPGVT 1094

Query: 1086 VIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMRQL 1142
             I F       PM +I L+QK  +H +L G  +L+  + L E K R+  VR+ +R L
Sbjct: 1095 NITFRANPPFEPMRIIELIQKN-RHIKLAGNDKLRIERPLPEVKDRVQLVRDVLRSL 1150