Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1150 a.a., transcription-repair coupling factor from Pectobacterium carotovorum WPP14

 Score = 1899 bits (4920), Expect = 0.0
 Identities = 941/1148 (81%), Positives = 1043/1148 (90%)

Query: 1    MPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIR 60
            MPE+YRYSLP KAG+QR LG+LTGAACA   AEI ERH G V+L+APDMQNALRL DEI+
Sbjct: 2    MPENYRYSLPPKAGEQRLLGQLTGAACAVECAEIIERHAGLVVLIAPDMQNALRLRDEIQ 61

Query: 61   QFTDSLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120
            QFTD  V +L DWETLPYDSFSPHQEIIS+RLSTLYQLP M RGVLI+PVNTLMQRVCPH
Sbjct: 62   QFTDQHVTTLPDWETLPYDSFSPHQEIISTRLSTLYQLPNMTRGVLILPVNTLMQRVCPH 121

Query: 121  SYLHGHALVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY 180
            S+LHGHALV+KKGQRLSRD LR+QL+ AGYR VDQVMEHGEYATRGALLDL+PMGS++PY
Sbjct: 122  SFLHGHALVLKKGQRLSRDKLRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPMGSEEPY 181

Query: 181  RLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRD 240
            R+DFFDDEIDSLR+FD DTQRTL EV  INLLPAHEFPTDKTAIELFRSQWR++FEV+RD
Sbjct: 182  RIDFFDDEIDSLRLFDVDTQRTLNEVPHINLLPAHEFPTDKTAIELFRSQWREQFEVRRD 241

Query: 241  AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETR 300
            AEHIYQQVSKG  PAGIEYWQPLFF+EPLP+LFSYFP NTL+VNTG+++ SA RF  + +
Sbjct: 242  AEHIYQQVSKGVWPAGIEYWQPLFFSEPLPSLFSYFPNNTLLVNTGNLEQSAERFWQDIQ 301

Query: 301  ARFENRGVDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPD 360
             RFE+R VDPMRPLLP ++LWLR D L  ELK WPR+QLKTD+L +KAAN NLA+  LP+
Sbjct: 302  QRFESRRVDPMRPLLPSDSLWLRVDGLFTELKAWPRVQLKTDTLPEKAANVNLAYLPLPE 361

Query: 361  LAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATG 420
            LA+Q QQKSPLD LR+F+E F G V+FSVESEGRRE L ELL RIK+ P  I  L +A  
Sbjct: 362  LAIQHQQKSPLDALRRFIEQFDGQVIFSVESEGRRETLQELLARIKLNPTLISTLEQAQD 421

Query: 421  NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG 480
             G YL+IGA+EHGFIDTL   ALICESDLLGERV+RRRQDSRRTIN DTLIRNLAEL PG
Sbjct: 422  RGTYLIIGASEHGFIDTLRQRALICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRPG 481

Query: 481  QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540
            QP+VHLEHGVGRY G+TTLEAGGIK EYL+LTYA + KLYVPVSSLHLISRYAGGA+ENA
Sbjct: 482  QPVVHLEHGVGRYAGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADENA 541

Query: 541  PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFE 600
            PLHKLGGDAW+RARQKAAE+VRDVAAELLDIYAQRAAK GFAFKHDK QYQLFC+SFPFE
Sbjct: 542  PLHKLGGDAWSRARQKAAERVRDVAAELLDIYAQRAAKSGFAFKHDKTQYQLFCESFPFE 601

Query: 601  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL 660
            TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN+KQVAVLVPTTL
Sbjct: 602  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL 661

Query: 661  LAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKW 720
            LAQQHFDNFRDRFANWPV+IEM+SRFRS +EQTQ+LE+  EGK+DILIGTHKLLQSDV+W
Sbjct: 662  LAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQVLEETQEGKVDILIGTHKLLQSDVRW 721

Query: 721  KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780
            +DLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
Sbjct: 722  RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 781

Query: 781  ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI 840
            ARRLAVKTFVREYDNLVVREAILRE+LRGGQVYYLYNDVENI+KA  RLAELVPEARIAI
Sbjct: 782  ARRLAVKTFVREYDNLVVREAILREILRGGQVYYLYNDVENIEKATQRLAELVPEARIAI 841

Query: 841  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900
            GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP+ANTIIIERADHFGLAQLHQLR
Sbjct: 842  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR 901

Query: 901  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960
            GRVGRSHHQAYA+LLTP+PKAM+TDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
Sbjct: 902  GRVGRSHHQAYAYLLTPNPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 961

Query: 961  EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020
            +DQSG M ++GFSLYMELLE+AVDALKAGREPSLEDL + QT+VELR+P+LLPDDFIPDV
Sbjct: 962  DDQSGQMTSVGFSLYMELLESAVDALKAGREPSLEDLINSQTDVELRLPALLPDDFIPDV 1021

Query: 1021 NTRLSFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG 1080
            NTRLS YKRIASAK   EL+E+KVELIDRFGLLPD +R LL +A LRQQAQ LGIR++EG
Sbjct: 1022 NTRLSLYKRIASAKTPAELDELKVELIDRFGLLPDASRYLLQVAALRQQAQALGIRRIEG 1081

Query: 1081 NEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMR 1140
            NEKGG IEF+E+N V+P  LIGLLQ+ P  +RLDGPTRLKF ++L++R  R++++ + + 
Sbjct: 1082 NEKGGFIEFSEQNRVDPSHLIGLLQRDPGTYRLDGPTRLKFMKDLSDRPQRIEFIGSLLG 1141

Query: 1141 QLEENAIA 1148
             + ++ +A
Sbjct: 1142 NMAQHTLA 1149