Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 2132 bits (5525), Expect = 0.0
 Identities = 1064/1148 (92%), Positives = 1109/1148 (96%)

Query: 1    MPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIR 60
            MPE  RY+LP KAGDQRQLGELTGAACATLVAEIAERH GPV+L+APDMQNALRLHDEIR
Sbjct: 1    MPEKQRYTLPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIR 60

Query: 61   QFTDSLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120
            QFTD +V +LADWETLPYDSFSPHQEIISSRLSTLYQLP+MQRGVLIVPVNTLMQRVCPH
Sbjct: 61   QFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPH 120

Query: 121  SYLHGHALVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY 180
            SYLHGHALVMKKGQRLSRDALRAQLD AGYRHVDQVMEHGEYATRGALLDL+PMGS+QPY
Sbjct: 121  SYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY 180

Query: 181  RLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRD 240
            RLDFFDDEIDSLR+FDADTQRTLEEVE+INLLPAHEFPTDK AIELFRSQWRD FEVKRD
Sbjct: 181  RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240

Query: 241  AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETR 300
            AEHIYQQVSKGTLPAGIEYWQPLFF+EPLP LFSYFPANTL+VNTG ++ SA RF+++T 
Sbjct: 241  AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTL 300

Query: 301  ARFENRGVDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPD 360
            ARFENRGVDPMRPLLPPEALWLR DEL +ELKRWPR+QLKTD L +KAANTNL F+ LPD
Sbjct: 301  ARFENRGVDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANTNLGFQKLPD 360

Query: 361  LAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATG 420
            LA+QAQQK+PLD LRKFLESF+GPV+FSVESEGRREALGELL RIK+APKRILRL EA  
Sbjct: 361  LAIQAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILRLDEAQD 420

Query: 421  NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG 480
             GRYLMIGAAEHGFIDT  NLALICESDLLGERVARRR DSRRTINPDTLIRNLAELH G
Sbjct: 421  AGRYLMIGAAEHGFIDTQRNLALICESDLLGERVARRRLDSRRTINPDTLIRNLAELHVG 480

Query: 481  QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540
            QP+VHLEHGVGRY GMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEE+A
Sbjct: 481  QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESA 540

Query: 541  PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFE 600
            PLHKLGGDAW+RARQKAAEKVRDVAAELLDIYAQRAAK+GFAFKHD+EQYQLFCDSFPFE
Sbjct: 541  PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600

Query: 601  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL 660
            TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN+KQVAVLVPTTL
Sbjct: 601  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL 660

Query: 661  LAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKW 720
            LAQQH+DNFRDRFANWPVRIEMLSRFRS KEQTQIL +A+EGKIDILIGTHKLLQSDVK 
Sbjct: 661  LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKL 720

Query: 721  KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780
            +DLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
Sbjct: 721  RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780

Query: 781  ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI 840
            ARRLAVKTFVREYD+LVVREAILRE+LRGGQVYYLYNDVENIQKAA+RLAELVPEARIAI
Sbjct: 781  ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840

Query: 841  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900
            GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
Sbjct: 841  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900

Query: 901  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960
            GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
Sbjct: 901  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960

Query: 961  EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020
            E+QSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
Sbjct: 961  EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020

Query: 1021 NTRLSFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG 1080
            NTRLSFYKRIASAK ENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG
Sbjct: 1021 NTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG 1080

Query: 1081 NEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMR 1140
            NEKGG IEFAEKNHV+P WLIGLLQKQPQHFRLDGPTRLKF Q+L+ERKTR+DWVR FM+
Sbjct: 1081 NEKGGTIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQ 1140

Query: 1141 QLEENAIA 1148
            QLEENAIA
Sbjct: 1141 QLEENAIA 1148