Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1164 a.a., transcription-repair coupling factor from Escherichia coli ECRC62

 Score = 2108 bits (5461), Expect = 0.0
 Identities = 1047/1148 (91%), Positives = 1103/1148 (96%)

Query: 1    MPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIR 60
            MPE YRY+LPVKAG+QR LGELTGAACATLVAEIAERH GPV+L+APDMQNALRLHDEI 
Sbjct: 17   MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 76

Query: 61   QFTDSLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120
            QFTD +V +LADWETLPYDSFSPHQ+IISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
Sbjct: 77   QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 136

Query: 121  SYLHGHALVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY 180
            S+LHGHALVMKKGQRLSRDALR QLD AGYRHVDQVMEHGEYATRGALLDL+PMGS+ PY
Sbjct: 137  SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 196

Query: 181  RLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRD 240
            RLDFFDDEIDSLRVFD D+QRTLEEVE+INLLPAHEFPTDK AIELFRSQWRD FEVKRD
Sbjct: 197  RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 256

Query: 241  AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETR 300
             EHIYQQVSKGTLPAGIEYWQPLFF+EPLP LFSYFPANTL+VNTGD++ SA RF+++T 
Sbjct: 257  PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL 316

Query: 301  ARFENRGVDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPD 360
            ARFENRGVDPMRPLLPP++LWLR DEL +ELK WPR+QLKT+ L  KAAN NL F+ LPD
Sbjct: 317  ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 376

Query: 361  LAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATG 420
            LAVQAQQK+PLD LRKFLE+F GPVVFSVESEGRREALGELL RIK+AP+RI+RL EA+ 
Sbjct: 377  LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 436

Query: 421  NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG 480
             GRYLMIGAAEHGF+D + NLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELH G
Sbjct: 437  RGRYLMIGAAEHGFVDKVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 496

Query: 481  QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540
            QP+VHLEHGVGRY GMTTLEAGGI GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
Sbjct: 497  QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 556

Query: 541  PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFE 600
            PLHKLGGDAW+RARQKAAEKVRDVAAELLDIYAQRAAK+GFAFKHD+EQYQLFCDSFPFE
Sbjct: 557  PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 616

Query: 601  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL 660
            TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV+N+KQVAVLVPTTL
Sbjct: 617  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 676

Query: 661  LAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKW 720
            LAQQH+DNFRDRFANWPVRIEM+SRFRS KEQTQIL + +EGKIDILIGTHKLLQSDVK+
Sbjct: 677  LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 736

Query: 721  KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780
            KDLGLLIVDEEHRFGVRHKERIKAMRA+VDILTLTATPIPRTLNMAMSGMRDLSIIATPP
Sbjct: 737  KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 796

Query: 781  ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI 840
            ARRLAVKTFVREYD+LVVREAILRE+LRGGQVYYLYNDVENIQKAA+RLAELVPEARIAI
Sbjct: 797  ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 856

Query: 841  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900
            GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
Sbjct: 857  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 916

Query: 901  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960
            GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
Sbjct: 917  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 976

Query: 961  EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020
            E+QSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
Sbjct: 977  EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1036

Query: 1021 NTRLSFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG 1080
            NTRLSFYKRIASAK ENELEEIKVELIDRFGLLPDPAR LLD+ARLRQQAQKLGIRKLEG
Sbjct: 1037 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQKLGIRKLEG 1096

Query: 1081 NEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMR 1140
            NEKGGVIEFAEKNHVNP WLIGLLQKQPQH+RLDGPTRLKF Q+L+ERKTR++WVR FMR
Sbjct: 1097 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1156

Query: 1141 QLEENAIA 1148
            +LEENAIA
Sbjct: 1157 ELEENAIA 1164